RNA–Protein interactions for RNA: ENST00000564276.1

PKM-211, Transcript of pyruvate kinase M1/2, humanhuman

TSL 1 (best)

Gene PKM, Length 753 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-211ENST00000564276 NISCHQ9Y2I1 1504 aa23.14■■□□□ 1.3
PKM-211ENST00000564276 ABCC9O60706 1549 aa22.22■■□□□ 1.15
PKM-211ENST00000564276 AEBP2Q6ZN18 517 aaPredicted RBP22.16■■□□□ 1.14
PKM-211ENST00000564276 DNAJC5BQ9UF47 199 aa21.75■■□□□ 1.07
PKM-211ENST00000564276 CHIC1Q5VXU3 224 aa21.57■■□□□ 1.04
PKM-211ENST00000564276 CCDC180Q9P1Z9 1646 aa21.19■□□□□ 0.98
PKM-211ENST00000564276 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
PKM-211ENST00000564276 DNAJC5Q9H3Z4 198 aa20.6■□□□□ 0.89
PKM-211ENST00000564276 PABPN1Q86U42 306 aaKnown RBP eCLIP20.55■□□□□ 0.88
PKM-211ENST00000564276 UNC13AQ9UPW8 1703 aa20.34■□□□□ 0.85
PKM-211ENST00000564276 NACADO15069 1562 aa20.24■□□□□ 0.83
PKM-211ENST00000564276 BICRAQ9NZM4 1560 aa20.16■□□□□ 0.82
PKM-211ENST00000564276 CECR2Q9BXF3 1484 aa20.07■□□□□ 0.8
PKM-211ENST00000564276 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
PKM-211ENST00000564276 CC2D2AQ9P2K1 1620 aa20.02■□□□□ 0.79
PKM-211ENST00000564276 EIF4G1Q04637 1599 aaKnown RBP19.7■□□□□ 0.74
PKM-211ENST00000564276 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
PKM-211ENST00000564276 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
PKM-211ENST00000564276 CUX2O14529 1486 aa19.46■□□□□ 0.71
PKM-211ENST00000564276 TRIM41Q8WV44 630 aa19.36■□□□□ 0.69
PKM-211ENST00000564276 SCRIBQ14160 1630 aa19.33■□□□□ 0.69
PKM-211ENST00000564276 ERCC6Q03468 1493 aa19.2■□□□□ 0.66
PKM-211ENST00000564276 DCAF1Q9Y4B6 1507 aa18.98■□□□□ 0.63
PKM-211ENST00000564276 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
PKM-211ENST00000564276 PHF23Q9BUL5 403 aaPredicted RBP18.95■□□□□ 0.62
PKM-211ENST00000564276 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
PKM-211ENST00000564276 NESP48681 1621 aa18.84■□□□□ 0.61
PKM-211ENST00000564276 THOC2Q8NI27 1593 aaKnown RBP18.81■□□□□ 0.6
PKM-211ENST00000564276 POTEDQ86YR6 584 aa18.71■□□□□ 0.59
PKM-211ENST00000564276 NCAPD3P42695 1498 aa18.69■□□□□ 0.58
PKM-211ENST00000564276 SMARCA2P51531 1590 aa18.64■□□□□ 0.57
PKM-211ENST00000564276 KIF21AQ7Z4S6 1674 aa18.59■□□□□ 0.57
PKM-211ENST00000564276 ATAD2BQ9ULI0 1458 aa18.53■□□□□ 0.56
PKM-211ENST00000564276 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
PKM-211ENST00000564276 HMGXB3Q12766 1538 aa18.47■□□□□ 0.55
PKM-211ENST00000564276 LAMC3Q9Y6N6 1575 aa18.44■□□□□ 0.54
PKM-211ENST00000564276 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
PKM-211ENST00000564276 RIMBP3CA6NJZ7 1639 aa18.38■□□□□ 0.53
PKM-211ENST00000564276 RIMBP3BA6NNM3 1639 aa18.38■□□□□ 0.53
PKM-211ENST00000564276 RIMBP3Q9UFD9 1639 aa18.38■□□□□ 0.53
PKM-211ENST00000564276 PDS5BQ9NTI5 1447 aa18.34■□□□□ 0.53
PKM-211ENST00000564276 SMARCA4P51532 1647 aa18.3■□□□□ 0.52
PKM-211ENST00000564276 BAZ1BQ9UIG0 1483 aaKnown RBP18.29■□□□□ 0.52
PKM-211ENST00000564276 WDR62O43379 1518 aa18.28■□□□□ 0.52
PKM-211ENST00000564276 MRC2Q9UBG0 1479 aa18.28■□□□□ 0.52
PKM-211ENST00000564276 TRHP20396 242 aaPredicted RBP18.22■□□□□ 0.51
PKM-211ENST00000564276 ARHGEF11O15085 1522 aa18.18■□□□□ 0.5
PKM-211ENST00000564276 CYB5RLQ6IPT4 315 aa18.11■□□□□ 0.49
PKM-211ENST00000564276 CADPSQ9ULU8 1353 aa18.08■□□□□ 0.49
PKM-211ENST00000564276 PEG3Q9GZU2 1588 aa18.07■□□□□ 0.48
PKM-211ENST00000564276 CEP164Q9UPV0 1460 aa18.01■□□□□ 0.47
PKM-211ENST00000564276 ARAP1Q96P48 1450 aa17.95■□□□□ 0.46
PKM-211ENST00000564276 FANCD2Q9BXW9 1451 aa17.92■□□□□ 0.46
PKM-211ENST00000564276 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
PKM-211ENST00000564276 URB2Q14146 1524 aaKnown RBP17.87■□□□□ 0.45
PKM-211ENST00000564276 ILDR1Q86SU0 546 aaPredicted RBP17.83■□□□□ 0.44
PKM-211ENST00000564276 ZNF608Q9ULD9 1512 aaPredicted RBP17.82■□□□□ 0.44
PKM-211ENST00000564276 CHD1O14646 1710 aa17.78■□□□□ 0.44
PKM-211ENST00000564276 CFTRP13569 1480 aa17.68■□□□□ 0.42
PKM-211ENST00000564276 RSF1Q96T23 1441 aaPredicted RBP17.67■□□□□ 0.42
PKM-211ENST00000564276 IFT140Q96RY7 1462 aa17.67■□□□□ 0.42
PKM-211ENST00000564276 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
PKM-211ENST00000564276 WIZO95785 1651 aa17.66■□□□□ 0.42
PKM-211ENST00000564276 FBLN2P98095 1184 aa17.59■□□□□ 0.41
PKM-211ENST00000564276 AQRO60306 1485 aaKnown RBP eCLIP17.52■□□□□ 0.47e-13■■■■■ 37.2
PKM-211ENST00000564276 PRDM2Q13029 1718 aa17.52■□□□□ 0.39
PKM-211ENST00000564276 FOXD1Q16676 465 aa17.48■□□□□ 0.39
PKM-211ENST00000564276 CLASP1Q7Z460 1538 aa17.47■□□□□ 0.39
PKM-211ENST00000564276 TOPBP1Q92547 1522 aa17.47■□□□□ 0.39
PKM-211ENST00000564276 PLPPR3Q6T4P5 718 aa17.47■□□□□ 0.39
PKM-211ENST00000564276 TARBP1Q13395 1621 aaKnown RBP17.42■□□□□ 0.38
PKM-211ENST00000564276 KDM4FA0A1W2PPD8 638 aa17.35■□□□□ 0.37
PKM-211ENST00000564276 GAPVD1Q14C86 1478 aa17.35■□□□□ 0.37
PKM-211ENST00000564276 SYNJ1O43426 1573 aa17.34■□□□□ 0.37
PKM-211ENST00000564276 KIF13AQ9H1H9 1805 aa17.33■□□□□ 0.37
PKM-211ENST00000564276 DNMBPQ6XZF7 1577 aa17.32■□□□□ 0.36
PKM-211ENST00000564276 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
PKM-211ENST00000564276 ABCC8Q09428 1581 aa17.28■□□□□ 0.36
PKM-211ENST00000564276 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.36
PKM-211ENST00000564276 CHMP7Q8WUX9 453 aaPredicted RBP17.25■□□□□ 0.35
PKM-211ENST00000564276 TDRD9Q8NDG6 1382 aaKnown RBP17.25■□□□□ 0.35
PKM-211ENST00000564276 POLA1P09884 1462 aaPredicted RBP17.24■□□□□ 0.35
PKM-211ENST00000564276 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
PKM-211ENST00000564276 ERCC6L2Q5T890 1561 aa17.21■□□□□ 0.35
PKM-211ENST00000564276 MAGI1Q96QZ7 1491 aaPredicted RBP17.15■□□□□ 0.34
PKM-211ENST00000564276 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
PKM-211ENST00000564276 SOGA1O94964 1423 aa17.12■□□□□ 0.33
PKM-211ENST00000564276 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
PKM-211ENST00000564276 HECW2Q9P2P5 1572 aa17.07■□□□□ 0.32
PKM-211ENST00000564276 WDR97A6NE52 1622 aa17.07■□□□□ 0.32
PKM-211ENST00000564276 KDM6BO15054 1643 aa17.07■□□□□ 0.32
PKM-211ENST00000564276 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
PKM-211ENST00000564276 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
PKM-211ENST00000564276 FAM69CQ0P6D2 419 aa17.03■□□□□ 0.32
PKM-211ENST00000564276 CEP170Q5SW79 1584 aa17.02■□□□□ 0.31
PKM-211ENST00000564276 TSPOAP1O95153 1857 aa17.01■□□□□ 0.31
PKM-211ENST00000564276 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
PKM-211ENST00000564276 FBXO41Q8TF61 875 aa16.98■□□□□ 0.31
PKM-211ENST00000564276 ABCC10Q5T3U5 1492 aa16.98■□□□□ 0.31
PKM-211ENST00000564276 ADGRL1O94910 1474 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms