Protein–RNA interactions for Protein: P02538

KRT6A, Keratin, type II cytoskeletal 6A, humanhuman

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT6AP02538 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 TPM3P8-201ENST00000330554 643 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
KRT6AP02538 AP006294.1-201ENST00000415407 339 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.26□□□□□ -0.13
KRT6AP02538 ALG3P1-201ENST00000508806 1114 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.26□□□□□ -0.13
KRT6AP02538 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.26□□□□□ -0.13
KRT6AP02538 AC010319.3-201ENST00000597028 470 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 AP001002.3-201ENST00000623482 206 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.26□□□□□ -0.13
KRT6AP02538 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.26□□□□□ -0.13
KRT6AP02538 AC020910.5-201ENST00000623668 1865 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.26□□□□□ -0.13
KRT6AP02538 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.26□□□□□ -0.13
KRT6AP02538 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.26□□□□□ -0.13
KRT6AP02538 AC012617.1-204ENST00000586340 2305 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.26□□□□□ -0.13
KRT6AP02538 AL138709.1-201ENST00000614840 1693 ntBASIC14.26□□□□□ -0.13
KRT6AP02538 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.26□□□□□ -0.13
KRT6AP02538 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
KRT6AP02538 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
KRT6AP02538 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
KRT6AP02538 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.25□□□□□ -0.13
KRT6AP02538 AL355864.2-201ENST00000447420 863 ntBASIC14.25□□□□□ -0.13
KRT6AP02538 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.25□□□□□ -0.13
KRT6AP02538 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.25□□□□□ -0.13
KRT6AP02538 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
KRT6AP02538 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
KRT6AP02538 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 AC011474.4-201ENST00000623523 2076 ntBASIC14.25□□□□□ -0.13
KRT6AP02538 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.25□□□□□ -0.13
KRT6AP02538 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC14.25□□□□□ -0.13
KRT6AP02538 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
KRT6AP02538 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
KRT6AP02538 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
KRT6AP02538 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.24□□□□□ -0.13
KRT6AP02538 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.24□□□□□ -0.13
KRT6AP02538 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
KRT6AP02538 AP000593.2-201ENST00000542775 1433 ntBASIC14.24□□□□□ -0.13
KRT6AP02538 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
KRT6AP02538 KHSRPP1-201ENST00000427983 1768 ntBASIC14.24□□□□□ -0.13
KRT6AP02538 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
KRT6AP02538 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.24□□□□□ -0.13
KRT6AP02538 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
KRT6AP02538 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms