RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
SPG11-210ENST00000558319 EHMT2Q96KQ7 1210 aa23.31■■□□□ 1.32
SPG11-210ENST00000558319 SUPT5HO00267 1087 aaKnown RBP22.98■■□□□ 1.27
SPG11-210ENST00000558319 SHROOM4Q9ULL8 1493 aa22.59■■□□□ 1.21
SPG11-210ENST00000558319 PELP1Q8IZL8 1130 aaKnown RBP22.54■■□□□ 1.2
SPG11-210ENST00000558319 TTBK1Q5TCY1 1321 aaPredicted RBP22.41■■□□□ 1.18
SPG11-210ENST00000558319 RANGAP1P46060 587 aaPredicted RBP22.05■■□□□ 1.12
SPG11-210ENST00000558319 FAM9AQ8IZU1 332 aaPredicted RBP21.99■■□□□ 1.11
SPG11-210ENST00000558319 ERICH6Q7L0X2 663 aa21.97■■□□□ 1.11
SPG11-210ENST00000558319 APLP2Q06481 763 aa21.77■■□□□ 1.08
SPG11-210ENST00000558319 ATP1B4Q9UN42 357 aaPredicted RBP21.67■■□□□ 1.06
SPG11-210ENST00000558319 PCGF6Q9BYE7 350 aa21.62■■□□□ 1.05
SPG11-210ENST00000558319 CENPBP07199 599 aaPredicted RBP21.55■■□□□ 1.04
SPG11-210ENST00000558319 CCER1Q8TC90 406 aaPredicted RBP21.51■■□□□ 1.03
SPG11-210ENST00000558319 MYT1Q01538 1121 aa21.45■■□□□ 1.02
SPG11-210ENST00000558319 YTHDC1Q96MU7 727 aaKnown RBP21.35■■□□□ 1.01
SPG11-210ENST00000558319 PPARGC1BQ86YN6 1023 aaKnown RBP21.26■□□□□ 0.99
SPG11-210ENST00000558319 NEFLP07196 543 aa21.09■□□□□ 0.97
SPG11-210ENST00000558319 CNGB1Q14028 1251 aaPredicted RBP21.07■□□□□ 0.96
SPG11-210ENST00000558319 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
SPG11-210ENST00000558319 ZEB1P37275 1124 aaPredicted RBP21.02■□□□□ 0.95
SPG11-210ENST00000558319 NISCHQ9Y2I1 1504 aa20.98■□□□□ 0.95
SPG11-210ENST00000558319 POLR3GLQ9BT43 218 aa20.95■□□□□ 0.94
SPG11-210ENST00000558319 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
SPG11-210ENST00000558319 MYT1LQ9UL68 1186 aa20.9■□□□□ 0.94
SPG11-210ENST00000558319 TRIM41Q8WV44 630 aa20.86■□□□□ 0.93
SPG11-210ENST00000558319 ITGAEP38570 1179 aa20.8■□□□□ 0.92
SPG11-210ENST00000558319 DAXXQ9UER7 740 aaPredicted RBP20.7■□□□□ 0.9
SPG11-210ENST00000558319 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.66■□□□□ 0.9
SPG11-210ENST00000558319 HNRNPUL2Q1KMD3 747 aaKnown RBP20.66■□□□□ 0.9
SPG11-210ENST00000558319 SLC4A1APQ9BWU0 796 aaKnown RBP20.6■□□□□ 0.89
SPG11-210ENST00000558319 HRCP23327 699 aa20.42■□□□□ 0.86
SPG11-210ENST00000558319 RTL5Q5HYW3 569 aaPredicted RBP20.34■□□□□ 0.85
SPG11-210ENST00000558319 BCL11AQ9H165 835 aa20.29■□□□□ 0.84
SPG11-210ENST00000558319 ZNF316A6NFI3 1004 aaPredicted RBP20.24■□□□□ 0.83
SPG11-210ENST00000558319 TRIM26Q12899 539 aaPredicted RBP20.23■□□□□ 0.83
SPG11-210ENST00000558319 LOC105371045A0A1W2PR82 267 aa20.19■□□□□ 0.82
SPG11-210ENST00000558319 BCANQ96GW7 911 aa20.1■□□□□ 0.81
SPG11-210ENST00000558319 CLSPNQ9HAW4 1339 aa20.09■□□□□ 0.81
SPG11-210ENST00000558319 SLC24A1O60721 1099 aa20.05■□□□□ 0.8
SPG11-210ENST00000558319 DIEXFQ68CQ4 756 aaKnown RBP19.98■□□□□ 0.79
SPG11-210ENST00000558319 GTF3C3Q9Y5Q9 886 aa19.97■□□□□ 0.79
SPG11-210ENST00000558319 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
SPG11-210ENST00000558319 FAM50AQ14320 339 aaKnown RBP19.92■□□□□ 0.78
SPG11-210ENST00000558319 ZNF326Q5BKZ1 582 aaKnown RBP19.91■□□□□ 0.78
SPG11-210ENST00000558319 TRIM52Q96A61 297 aa19.87■□□□□ 0.77
SPG11-210ENST00000558319 PLPPR3Q6T4P5 718 aa19.86■□□□□ 0.77
SPG11-210ENST00000558319 ARID3CA6NKF2 412 aa19.82■□□□□ 0.76
SPG11-210ENST00000558319 EIF5BO60841 1220 aaKnown RBP19.8■□□□□ 0.76
SPG11-210ENST00000558319 FBLN2P98095 1184 aa19.74■□□□□ 0.75
SPG11-210ENST00000558319 CDK11AQ9UQ88 783 aaPredicted RBP19.73■□□□□ 0.75
SPG11-210ENST00000558319 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
SPG11-210ENST00000558319 NPM2Q86SE8 214 aaKnown RBP19.54■□□□□ 0.72
SPG11-210ENST00000558319 P3H3Q8IVL6 736 aa19.51■□□□□ 0.71
SPG11-210ENST00000558319 CANXP27824 592 aaKnown RBP19.51■□□□□ 0.71
SPG11-210ENST00000558319 ZBTB47Q9UFB7 747 aaPredicted RBP19.49■□□□□ 0.71
SPG11-210ENST00000558319 SENP3Q9H4L4 574 aaPredicted RBP19.49■□□□□ 0.71
SPG11-210ENST00000558319 ANP32AP39687 249 aaKnown RBP19.43■□□□□ 0.7
SPG11-210ENST00000558319 ACIN1Q9UKV3 1341 aaKnown RBP19.42■□□□□ 0.7
SPG11-210ENST00000558319 ANP32CO43423 234 aa19.42■□□□□ 0.7
SPG11-210ENST00000558319 PLEKHG5O94827 1062 aa19.41■□□□□ 0.7
SPG11-210ENST00000558319 ZNF777Q9ULD5 760 aaPredicted RBP19.37■□□□□ 0.69
SPG11-210ENST00000558319 NBR1Q14596 966 aa19.32■□□□□ 0.68
SPG11-210ENST00000558319 GLIPR1L2Q4G1C9 344 aa19.32■□□□□ 0.68
SPG11-210ENST00000558319 SALL2Q9Y467 1007 aaPredicted RBP19.31■□□□□ 0.68
SPG11-210ENST00000558319 ARXQ96QS3 562 aa19.28■□□□□ 0.68
SPG11-210ENST00000558319 CHGAP10645 457 aaKnown RBP19.27■□□□□ 0.68
SPG11-210ENST00000558319 A0A0G2JS52 829 aa19.25■□□□□ 0.67
SPG11-210ENST00000558319 FKBP8Q14318 412 aa19.23■□□□□ 0.67
SPG11-210ENST00000558319 SCAF1Q9H7N4 1312 aaKnown RBP19.22■□□□□ 0.67
SPG11-210ENST00000558319 ANP32BQ92688 251 aaKnown RBP19.21■□□□□ 0.67
SPG11-210ENST00000558319 NEFMP07197 916 aa19.15■□□□□ 0.66
SPG11-210ENST00000558319 ABCC9O60706 1549 aa19.15■□□□□ 0.66
SPG11-210ENST00000558319 ZBTB7CA1YPR0 619 aa19.11■□□□□ 0.65
SPG11-210ENST00000558319 HSP90AA1P07900 732 aaKnown RBP19.11■□□□□ 0.65
SPG11-210ENST00000558319 STAG3Q9UJ98 1225 aa19.1■□□□□ 0.65
SPG11-210ENST00000558319 SENP3-EIF4A1A0A087X0R7 540 aa19.08■□□□□ 0.65
SPG11-210ENST00000558319 ESF1Q9H501 851 aaKnown RBP19.04■□□□□ 0.64
SPG11-210ENST00000558319 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.01■□□□□ 0.632e-6■■■□□ 18.5
SPG11-210ENST00000558319 FAM9BQ8IZU0 186 aa19■□□□□ 0.63
SPG11-210ENST00000558319 IRX6P78412 446 aaPredicted RBP18.92■□□□□ 0.62
SPG11-210ENST00000558319 TULP1O00294 542 aaPredicted RBP18.92■□□□□ 0.62
SPG11-210ENST00000558319 TPRNQ4KMQ1 711 aa18.91■□□□□ 0.62
SPG11-210ENST00000558319 CHIC2Q9UKJ5 165 aa18.91■□□□□ 0.62
SPG11-210ENST00000558319 HIRIP3Q9BW71 556 aaPredicted RBP18.91■□□□□ 0.62
SPG11-210ENST00000558319 HNRNPUQ00839 825 aaKnown RBP eCLIP18.9■□□□□ 0.62
SPG11-210ENST00000558319 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.62
SPG11-210ENST00000558319 KDM2AQ9Y2K7 1162 aa18.87■□□□□ 0.61
SPG11-210ENST00000558319 C14orf37Q86TY3 774 aa18.85■□□□□ 0.61
SPG11-210ENST00000558319 RTN4Q9NQC3 1192 aaKnown RBP18.83■□□□□ 0.6
SPG11-210ENST00000558319 DDX10Q13206 875 aaKnown RBP18.82■□□□□ 0.6
SPG11-210ENST00000558319 TAOK2Q9UL54 1235 aa18.82■□□□□ 0.6
SPG11-210ENST00000558319 CCDC136Q96JN2 1154 aa18.82■□□□□ 0.6
SPG11-210ENST00000558319 TRIM44Q96DX7 344 aaPredicted RBP18.68■□□□□ 0.58
SPG11-210ENST00000558319 ANP32EQ9BTT0 268 aa18.64■□□□□ 0.57
SPG11-210ENST00000558319 AMER1Q5JTC6 1135 aaPredicted RBP18.63■□□□□ 0.57
SPG11-210ENST00000558319 TNNT2P45379 298 aaPredicted RBP18.62■□□□□ 0.57
SPG11-210ENST00000558319 TONSLQ96HA7 1378 aa18.62■□□□□ 0.57
SPG11-210ENST00000558319 NPM1P06748 294 aaKnown RBP eCLIP18.61■□□□□ 0.57
SPG11-210ENST00000558319 NAP1L5Q96NT1 182 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms