RNA–Protein interactions for RNA: ENST00000449880.6

ITGB4-202, Transcript of integrin subunit beta 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ITGB4, Length 5,689 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-202ENST00000449880 NISCHQ9Y2I1 1504 aa24.5■■□□□ 1.51
ITGB4-202ENST00000449880 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
ITGB4-202ENST00000449880 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
ITGB4-202ENST00000449880 SHROOM4Q9ULL8 1493 aa22.56■■□□□ 1.2
ITGB4-202ENST00000449880 PELP1Q8IZL8 1130 aaKnown RBP22.4■■□□□ 1.18
ITGB4-202ENST00000449880 MYT1Q01538 1121 aa22.13■■□□□ 1.13
ITGB4-202ENST00000449880 ZEB1P37275 1124 aaPredicted RBP21.69■■□□□ 1.06
ITGB4-202ENST00000449880 CENPBP07199 599 aaPredicted RBP21.62■■□□□ 1.05
ITGB4-202ENST00000449880 APLP2Q06481 763 aa21.44■■□□□ 1.02
ITGB4-202ENST00000449880 PCGF6Q9BYE7 350 aa21.44■■□□□ 1.02
ITGB4-202ENST00000449880 EHMT2Q96KQ7 1210 aa21.43■■□□□ 1.02
ITGB4-202ENST00000449880 FAM9AQ8IZU1 332 aaPredicted RBP21.35■■□□□ 1.01
ITGB4-202ENST00000449880 CCER1Q8TC90 406 aaPredicted RBP21.3■■□□□ 1
ITGB4-202ENST00000449880 ERICH6Q7L0X2 663 aa21.24■□□□□ 0.99
ITGB4-202ENST00000449880 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
ITGB4-202ENST00000449880 HRCP23327 699 aa21.01■□□□□ 0.95
ITGB4-202ENST00000449880 NEFLP07196 543 aa20.82■□□□□ 0.92
ITGB4-202ENST00000449880 TRIM26Q12899 539 aaPredicted RBP20.77■□□□□ 0.92
ITGB4-202ENST00000449880 TTBK1Q5TCY1 1321 aaPredicted RBP20.72■□□□□ 0.91
ITGB4-202ENST00000449880 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
ITGB4-202ENST00000449880 RANGAP1P46060 587 aaPredicted RBP20.6■□□□□ 0.89
ITGB4-202ENST00000449880 ABCC9O60706 1549 aa20.59■□□□□ 0.89
ITGB4-202ENST00000449880 ATP1B4Q9UN42 357 aaPredicted RBP20.59■□□□□ 0.89
ITGB4-202ENST00000449880 UBTFP17480 764 aaKnown RBP20.55■□□□□ 0.88
ITGB4-202ENST00000449880 YTHDC1Q96MU7 727 aaKnown RBP20.53■□□□□ 0.88
ITGB4-202ENST00000449880 CCDC180Q9P1Z9 1646 aa20.43■□□□□ 0.86
ITGB4-202ENST00000449880 ZCCHC6Q5VYS8 1495 aaKnown RBP20.42■□□□□ 0.86
ITGB4-202ENST00000449880 LOC105371045A0A1W2PR82 267 aa20.36■□□□□ 0.85
ITGB4-202ENST00000449880 PPARGC1BQ86YN6 1023 aaKnown RBP20.23■□□□□ 0.83
ITGB4-202ENST00000449880 PABPN1Q86U42 306 aaKnown RBP eCLIP20.2■□□□□ 0.82
ITGB4-202ENST00000449880 DIEXFQ68CQ4 756 aaKnown RBP20.1■□□□□ 0.81
ITGB4-202ENST00000449880 DAXXQ9UER7 740 aaPredicted RBP20.09■□□□□ 0.81
ITGB4-202ENST00000449880 SCRIBQ14160 1630 aa20.06■□□□□ 0.8
ITGB4-202ENST00000449880 RTL5Q5HYW3 569 aaPredicted RBP20.01■□□□□ 0.79
ITGB4-202ENST00000449880 MYT1LQ9UL68 1186 aa19.99■□□□□ 0.79
ITGB4-202ENST00000449880 GTF3C3Q9Y5Q9 886 aa19.93■□□□□ 0.78
ITGB4-202ENST00000449880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.92■□□□□ 0.78
ITGB4-202ENST00000449880 HNRNPUL2Q1KMD3 747 aaKnown RBP19.92■□□□□ 0.78
ITGB4-202ENST00000449880 CLSPNQ9HAW4 1339 aa19.86■□□□□ 0.77
ITGB4-202ENST00000449880 ACIN1Q9UKV3 1341 aaKnown RBP19.84■□□□□ 0.77
ITGB4-202ENST00000449880 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
ITGB4-202ENST00000449880 ITGAEP38570 1179 aa19.74■□□□□ 0.75
ITGB4-202ENST00000449880 ZNF316A6NFI3 1004 aaPredicted RBP19.67■□□□□ 0.74
ITGB4-202ENST00000449880 CDK11AQ9UQ88 783 aaPredicted RBP19.64■□□□□ 0.74
ITGB4-202ENST00000449880 RB1CC1Q8TDY2 1594 aa19.63■□□□□ 0.73
ITGB4-202ENST00000449880 DCAF1Q9Y4B6 1507 aa19.58■□□□□ 0.73
ITGB4-202ENST00000449880 NACADO15069 1562 aa19.58■□□□□ 0.73
ITGB4-202ENST00000449880 CSRNP3Q8WYN3 585 aa19.55■□□□□ 0.72
ITGB4-202ENST00000449880 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
ITGB4-202ENST00000449880 SLC4A1APQ9BWU0 796 aaKnown RBP19.49■□□□□ 0.71
ITGB4-202ENST00000449880 ANP32CO43423 234 aa19.44■□□□□ 0.7
ITGB4-202ENST00000449880 CNGB1Q14028 1251 aaPredicted RBP19.42■□□□□ 0.7
ITGB4-202ENST00000449880 BCANQ96GW7 911 aa19.39■□□□□ 0.7
ITGB4-202ENST00000449880 FAM50AQ14320 339 aaKnown RBP19.39■□□□□ 0.69
ITGB4-202ENST00000449880 ANP32AP39687 249 aaKnown RBP19.34■□□□□ 0.69
ITGB4-202ENST00000449880 MYO15BQ96JP2 1530 aa19.32■□□□□ 0.68
ITGB4-202ENST00000449880 SCAF1Q9H7N4 1312 aaKnown RBP19.25■□□□□ 0.67
ITGB4-202ENST00000449880 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
ITGB4-202ENST00000449880 GLIPR1L2Q4G1C9 344 aa19.23■□□□□ 0.67
ITGB4-202ENST00000449880 P3H3Q8IVL6 736 aa19.18■□□□□ 0.66
ITGB4-202ENST00000449880 BAZ1AQ9NRL2 1556 aaPredicted RBP19.17■□□□□ 0.66
ITGB4-202ENST00000449880 NEUROD1Q13562 356 aa19.16■□□□□ 0.66
ITGB4-202ENST00000449880 CECR2Q9BXF3 1484 aa19.15■□□□□ 0.66
ITGB4-202ENST00000449880 FBLN2P98095 1184 aa19.11■□□□□ 0.65
ITGB4-202ENST00000449880 BAZ1BQ9UIG0 1483 aaKnown RBP19.09■□□□□ 0.65
ITGB4-202ENST00000449880 FKBP8Q14318 412 aa19.07■□□□□ 0.64
ITGB4-202ENST00000449880 ZBTB47Q9UFB7 747 aaPredicted RBP19.07■□□□□ 0.64
ITGB4-202ENST00000449880 EEA1Q15075 1411 aa19.06■□□□□ 0.64
ITGB4-202ENST00000449880 WRNQ14191 1432 aaPredicted RBP eCLIP19.02■□□□□ 0.64
ITGB4-202ENST00000449880 ANP32EQ9BTT0 268 aa18.99■□□□□ 0.63
ITGB4-202ENST00000449880 ZNF326Q5BKZ1 582 aaKnown RBP18.98■□□□□ 0.63
ITGB4-202ENST00000449880 EIF5BO60841 1220 aaKnown RBP18.98■□□□□ 0.63
ITGB4-202ENST00000449880 GOLGA3Q08378 1498 aa18.98■□□□□ 0.63
ITGB4-202ENST00000449880 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
ITGB4-202ENST00000449880 CLIP1P30622 1438 aa18.96■□□□□ 0.63
ITGB4-202ENST00000449880 ARID3CA6NKF2 412 aa18.95■□□□□ 0.62
ITGB4-202ENST00000449880 CEP162Q5TB80 1403 aa18.93■□□□□ 0.62
ITGB4-202ENST00000449880 NEFMP07197 916 aa18.93■□□□□ 0.62
ITGB4-202ENST00000449880 ANP32BQ92688 251 aaKnown RBP18.92■□□□□ 0.62
ITGB4-202ENST00000449880 SLC24A1O60721 1099 aa18.86■□□□□ 0.61
ITGB4-202ENST00000449880 TNIKQ9UKE5 1360 aa18.86■□□□□ 0.61
ITGB4-202ENST00000449880 NPM2Q86SE8 214 aaKnown RBP18.84■□□□□ 0.61
ITGB4-202ENST00000449880 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.6
ITGB4-202ENST00000449880 CANXP27824 592 aaKnown RBP18.83■□□□□ 0.6
ITGB4-202ENST00000449880 CCDC88BA6NC98 1476 aa18.82■□□□□ 0.6
ITGB4-202ENST00000449880 KIF27Q86VH2 1401 aa18.79■□□□□ 0.6
ITGB4-202ENST00000449880 HNRNPUQ00839 825 aaKnown RBP eCLIP18.78■□□□□ 0.6
ITGB4-202ENST00000449880 ZNF777Q9ULD5 760 aaPredicted RBP18.78■□□□□ 0.6
ITGB4-202ENST00000449880 WIZO95785 1651 aa18.77■□□□□ 0.6
ITGB4-202ENST00000449880 UPF2Q9HAU5 1272 aaKnown RBP18.77■□□□□ 0.6
ITGB4-202ENST00000449880 TONSLQ96HA7 1378 aa18.76■□□□□ 0.59
ITGB4-202ENST00000449880 MIER1Q8N108 512 aa18.74■□□□□ 0.59
ITGB4-202ENST00000449880 ESF1Q9H501 851 aaKnown RBP18.74■□□□□ 0.59
ITGB4-202ENST00000449880 TOP2AP11388 1531 aaKnown RBP18.73■□□□□ 0.59
ITGB4-202ENST00000449880 NBR1Q14596 966 aa18.72■□□□□ 0.59
ITGB4-202ENST00000449880 SOGA1O94964 1423 aa18.71■□□□□ 0.59
ITGB4-202ENST00000449880 CCDC136Q96JN2 1154 aa18.71■□□□□ 0.59
ITGB4-202ENST00000449880 SMARCA2P51531 1590 aa18.71■□□□□ 0.59
ITGB4-202ENST00000449880 DDRGK1Q96HY6 314 aa18.71■□□□□ 0.59
ITGB4-202ENST00000449880 ABCC8Q09428 1581 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms