Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PRMT1-220ENST00000534676 915 ntTSL 225.88■■□□□ 1.734e-7■□□□□ 9.1
YBX3P16989 PRMT1-218ENST00000534280 766 ntTSL 325.67■■□□□ 1.74e-7■□□□□ 9.1
YBX3P16989 PRMT1-203ENST00000524771 713 ntTSL 321.49■■□□□ 1.034e-7■□□□□ 9.1
YBX3P16989 PRMT1-207ENST00000527382 699 ntTSL 316.43■□□□□ 0.224e-7■□□□□ 9.1
YBX3P16989 PRMT1-219ENST00000534465 779 ntTSL 316.43■□□□□ 0.224e-7■□□□□ 9.1
YBX3P16989 PRMT1-212ENST00000529284 1182 ntTSL 515.1■□□□□ 0.014e-7■□□□□ 9.1
YBX3P16989 PRMT1-206ENST00000526224 578 ntTSL 314.66□□□□□ -0.064e-7■□□□□ 9.1
YBX3P16989 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.972e-6■□□□□ 9.1
YBX3P16989 AP1M1-204ENST00000586461 545 ntTSL 312.75□□□□□ -0.371e-6■□□□□ 9.1
YBX3P16989 DCK-204ENST00000504952 2614 ntTSL 3 BASIC12.74□□□□□ -0.372e-6■□□□□ 9.1
YBX3P16989 DCK-202ENST00000503359 2683 ntTSL 212.49□□□□□ -0.412e-6■□□□□ 9.1
YBX3P16989 DCK-203ENST00000504730 2401 ntTSL 3 BASIC11.79□□□□□ -0.522e-6■□□□□ 9.1
YBX3P16989 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.031e-6■□□□□ 9.1
YBX3P16989 COQ9-215ENST00000568790 1027 ntTSL 230.94■■■□□ 2.547e-7■□□□□ 9.1
YBX3P16989 COQ9-203ENST00000562734 1039 ntTSL 230.66■■■□□ 2.57e-7■□□□□ 9.1
YBX3P16989 COQ9-207ENST00000564655 935 ntTSL 330.66■■■□□ 2.57e-7■□□□□ 9.1
YBX3P16989 COQ9-206ENST00000564115 845 ntTSL 529■■■□□ 2.237e-7■□□□□ 9.1
YBX3P16989 COQ9-208ENST00000565964 581 ntTSL 326.36■■□□□ 1.817e-7■□□□□ 9.1
YBX3P16989 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.496e-7■□□□□ 9.1
YBX3P16989 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.95■■□□□ 1.266e-7■□□□□ 9.1
YBX3P16989 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.117e-7■□□□□ 9.1
YBX3P16989 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21.71■■□□□ 1.077e-7■□□□□ 9.1
YBX3P16989 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.69■□□□□ 0.97e-7■□□□□ 9.1
YBX3P16989 MRPL20-202ENST00000477686 314 ntTSL 320.02■□□□□ 0.86e-7■□□□□ 9.1
YBX3P16989 MRPL20-204ENST00000487659 1693 ntTSL 219.69■□□□□ 0.746e-7■□□□□ 9.1
YBX3P16989 COQ9-205ENST00000563391 713 ntTSL 517.63■□□□□ 0.417e-7■□□□□ 9.1
YBX3P16989 COQ9-204ENST00000563166 399 ntTSL 516.52■□□□□ 0.247e-7■□□□□ 9.1
YBX3P16989 COQ9-202ENST00000562426 976 ntTSL 216.45■□□□□ 0.227e-7■□□□□ 9.1
YBX3P16989 YKT6-202ENST00000421621 2463 ntTSL 1 (best)16.17■□□□□ 0.186e-7■□□□□ 9.1
YBX3P16989 COQ9-212ENST00000567480 562 ntTSL 415.73■□□□□ 0.117e-7■□□□□ 9.1
YBX3P16989 YKT6-203ENST00000424864 673 ntTSL 514.27□□□□□ -0.136e-7■□□□□ 9.1
YBX3P16989 ACLY-210ENST00000592970 540 ntTSL 414.05□□□□□ -0.166e-8■□□□□ 9.1
YBX3P16989 COQ9-213ENST00000567576 703 ntTSL 210.37□□□□□ -0.757e-7■□□□□ 9.1
YBX3P16989 MAP4K4-213ENST00000476609 3598 ntTSL 29.66□□□□□ -0.862e-6■□□□□ 9.1
YBX3P16989 CIZ1-218ENST00000476727 1205 ntTSL 524.13■■□□□ 1.455e-15■□□□□ 9.1
YBX3P16989 CTNND1-210ENST00000524630 6553 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.769e-12■□□□□ 9.1
YBX3P16989 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC9.52□□□□□ -0.899e-12■□□□□ 9.1
YBX3P16989 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC9.2□□□□□ -0.949e-12■□□□□ 9.1
YBX3P16989 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.969e-12■□□□□ 9.1
YBX3P16989 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.979e-12■□□□□ 9.1
YBX3P16989 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC8.91□□□□□ -0.989e-12■□□□□ 9.1
YBX3P16989 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC8.91□□□□□ -0.989e-12■□□□□ 9.1
YBX3P16989 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC8.75□□□□□ -1.019e-12■□□□□ 9.1
YBX3P16989 CTNND1-206ENST00000415361 5832 ntTSL 1 (best) BASIC8.68□□□□□ -1.029e-12■□□□□ 9.1
YBX3P16989 CTNND1-225ENST00000530094 5814 ntTSL 1 (best) BASIC8.68□□□□□ -1.029e-12■□□□□ 9.1
YBX3P16989 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC8.65□□□□□ -1.029e-12■□□□□ 9.1
YBX3P16989 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC8.65□□□□□ -1.029e-12■□□□□ 9.1
YBX3P16989 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC8.65□□□□□ -1.029e-12■□□□□ 9.1
YBX3P16989 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC8.5□□□□□ -1.059e-12■□□□□ 9.1
YBX3P16989 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC8.31□□□□□ -1.089e-12■□□□□ 9.1
YBX3P16989 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC8.28□□□□□ -1.089e-12■□□□□ 9.1
YBX3P16989 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC8.23□□□□□ -1.099e-12■□□□□ 9.1
YBX3P16989 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC8.22□□□□□ -1.099e-12■□□□□ 9.1
YBX3P16989 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC8.22□□□□□ -1.099e-12■□□□□ 9.1
YBX3P16989 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC8.13□□□□□ -1.119e-12■□□□□ 9.1
YBX3P16989 CTNND1-222ENST00000529919 4780 ntTSL 5 BASIC8.09□□□□□ -1.119e-12■□□□□ 9.1
YBX3P16989 NFATC3-215ENST00000565750 529 ntTSL 38.09□□□□□ -1.119e-12■□□□□ 9.1
YBX3P16989 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.01□□□□□ -1.139e-12■□□□□ 9.1
YBX3P16989 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.7□□□□□ -1.189e-12■□□□□ 9.1
YBX3P16989 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC7.69□□□□□ -1.189e-12■□□□□ 9.1
YBX3P16989 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC7.5□□□□□ -1.219e-12■□□□□ 9.1
YBX3P16989 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC7.5□□□□□ -1.219e-12■□□□□ 9.1
YBX3P16989 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.32□□□□□ -1.249e-12■□□□□ 9.1
YBX3P16989 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.12□□□□□ -1.279e-12■□□□□ 9.1
YBX3P16989 CTNND1-226ENST00000530720 832 ntTSL 46.36□□□□□ -1.399e-12■□□□□ 9.1
YBX3P16989 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.3□□□□□ -1.49e-12■□□□□ 9.1
YBX3P16989 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.3□□□□□ -1.49e-12■□□□□ 9.1
YBX3P16989 ARF1-205ENST00000473546 291 ntTSL 217.63■□□□□ 0.419e-33■□□□□ 9.1
YBX3P16989 AP2M1-219ENST00000484469 558 ntTSL 323.8■■□□□ 1.49e-12■□□□□ 9.1
YBX3P16989 HMGCS1-206ENST00000511774 500 ntTSL 427.3■■□□□ 1.963e-11■□□□□ 9.1
YBX3P16989 HMGCS1-203ENST00000507004 950 ntTSL 219.35■□□□□ 0.693e-11■□□□□ 9.1
YBX3P16989 HMGCS1-204ENST00000507293 708 ntTSL 1 (best)15.78■□□□□ 0.123e-11■□□□□ 9.1
YBX3P16989 VAPA-203ENST00000577539 3760 nt5.43□□□□□ -1.542e-7■□□□□ 9.1
YBX3P16989 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.533e-9■□□□□ 9.1
YBX3P16989 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.333e-9■□□□□ 9.1
YBX3P16989 TMUB1-206ENST00000488752 584 ntTSL 229.02■■■□□ 2.243e-9■□□□□ 9.1
YBX3P16989 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.173e-9■□□□□ 9.1
YBX3P16989 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC27.09■■□□□ 1.933e-9■□□□□ 9.1
YBX3P16989 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.283e-9■□□□□ 9.1
YBX3P16989 XPO1-211ENST00000451765 643 ntTSL 322.49■■□□□ 1.193e-13■□□□□ 9.1
YBX3P16989 SLC25A39-215ENST00000592372 867 ntTSL 321.91■■□□□ 1.15e-13■□□□□ 9.1
YBX3P16989 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.173e-13■□□□□ 9.1
YBX3P16989 XPO1-212ENST00000457483 488 ntTSL 49.61□□□□□ -0.873e-13■□□□□ 9.1
YBX3P16989 XPO1-204ENST00000420673 682 ntTSL 28.18□□□□□ -1.13e-13■□□□□ 9.1
YBX3P16989 XPO1-220ENST00000481214 720 ntTSL 27.5□□□□□ -1.213e-13■□□□□ 9.1
YBX3P16989 USP48-215ENST00000534705 566 ntTSL 47.27□□□□□ -1.255e-9■□□□□ 9.1
YBX3P16989 XPO1-224ENST00000495003 568 ntTSL 26.98□□□□□ -1.293e-13■□□□□ 9.1
YBX3P16989 USP48-211ENST00000526044 549 ntTSL 36.98□□□□□ -1.295e-9■□□□□ 9.1
YBX3P16989 XPO1-209ENST00000443240 565 ntTSL 46.53□□□□□ -1.363e-13■□□□□ 9.1
YBX3P16989 XPO1-205ENST00000422552 382 ntTSL 56.18□□□□□ -1.423e-13■□□□□ 9.1
YBX3P16989 PSMB1-202ENST00000462957 1939 ntTSL 25.27□□□□□ -1.573e-13■□□□□ 9.1
YBX3P16989 XPO1-210ENST00000449444 579 ntTSL 45.21□□□□□ -1.583e-13■□□□□ 9.1
YBX3P16989 XPO1-207ENST00000436018 318 ntTSL 45□□□□□ -1.613e-13■□□□□ 9.1
YBX3P16989 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.63■□□□□ 0.898e-11■□□□□ 9.1
YBX3P16989 PPA1-201ENST00000373230 787 ntTSL 59.37□□□□□ -0.918e-11■□□□□ 9.1
YBX3P16989 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.813e-9■□□□□ 9.1
YBX3P16989 HMBS-226ENST00000640813 1283 ntTSL 524.64■■□□□ 1.543e-9■□□□□ 9.1
YBX3P16989 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.11■■□□□ 1.453e-9■□□□□ 9.1
YBX3P16989 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC24.03■■□□□ 1.443e-9■□□□□ 9.1
YBX3P16989 HMBS-212ENST00000542044 1544 ntTSL 523.83■■□□□ 1.413e-9■□□□□ 9.1
Retrieved 100 of 29,075 protein–RNA pairs in 117.7 ms