RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 AEBP2Q6ZN18 517 aaPredicted RBP14.92□□□□□ -0.02
VAPA-203ENST00000577539 CHIC1Q5VXU3 224 aa14.9□□□□□ -0.02
VAPA-203ENST00000577539 PHF23Q9BUL5 403 aaPredicted RBP13.46□□□□□ -0.25
VAPA-203ENST00000577539 PLPPR3Q6T4P5 718 aa12.17□□□□□ -0.46
VAPA-203ENST00000577539 SENP3Q9H4L4 574 aaPredicted RBP12.07□□□□□ -0.48
VAPA-203ENST00000577539 ADRA2BP18089 450 aa11.75□□□□□ -0.53
VAPA-203ENST00000577539 PPP6R1Q9UPN7 881 aa11.63□□□□□ -0.55
VAPA-203ENST00000577539 KCNA4P22459 653 aa11.52□□□□□ -0.57
VAPA-203ENST00000577539 FOXD1Q16676 465 aa11.41□□□□□ -0.58
VAPA-203ENST00000577539 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
VAPA-203ENST00000577539 CSRNP3Q8WYN3 585 aa11.15□□□□□ -0.62
VAPA-203ENST00000577539 PPP4R3CPQ6ZMV5 832 aa10.89□□□□□ -0.67
VAPA-203ENST00000577539 ZBTB22O15209 634 aa10.88□□□□□ -0.67
VAPA-203ENST00000577539 SLC4A1APQ9BWU0 796 aaKnown RBP10.81□□□□□ -0.68
VAPA-203ENST00000577539 NPM3O75607 178 aaKnown RBP10.77□□□□□ -0.69
VAPA-203ENST00000577539 NISCHQ9Y2I1 1504 aa10.74□□□□□ -0.69
VAPA-203ENST00000577539 PIAS4Q8N2W9 510 aaPredicted RBP10.64□□□□□ -0.71
VAPA-203ENST00000577539 DNAJC5BQ9UF47 199 aa10.56□□□□□ -0.72
VAPA-203ENST00000577539 NCBP3Q53F19 620 aaKnown RBP10.46□□□□□ -0.74
VAPA-203ENST00000577539 CNKSR2Q8WXI2 1034 aa10.39□□□□□ -0.75
VAPA-203ENST00000577539 MAPK8IP2Q13387 824 aaPredicted RBP10.28□□□□□ -0.76
VAPA-203ENST00000577539 FOXD4L1Q9NU39 408 aa10.21□□□□□ -0.77
VAPA-203ENST00000577539 RTN4Q9NQC3 1192 aaKnown RBP10.2□□□□□ -0.78
VAPA-203ENST00000577539 SLC4A2P04920 1241 aa10.17□□□□□ -0.78
VAPA-203ENST00000577539 RNF216Q9NWF9 866 aaPredicted RBP10.11□□□□□ -0.79
VAPA-203ENST00000577539 HOXD11P31277 338 aaPredicted RBP10.02□□□□□ -0.8
VAPA-203ENST00000577539 SLC24A1O60721 1099 aa10.01□□□□□ -0.81
VAPA-203ENST00000577539 SCAF1Q9H7N4 1312 aaKnown RBP9.99□□□□□ -0.81
VAPA-203ENST00000577539 MSH5O43196 834 aa9.93□□□□□ -0.82
VAPA-203ENST00000577539 DMRT2Q9Y5R5 561 aa9.91□□□□□ -0.82
VAPA-203ENST00000577539 AMER1Q5JTC6 1135 aaPredicted RBP9.9□□□□□ -0.82
VAPA-203ENST00000577539 ATF5Q9Y2D1 282 aaPredicted RBP9.82□□□□□ -0.84
VAPA-203ENST00000577539 ATXN8OSP0DMR3 200 aa9.81□□□□□ -0.84
VAPA-203ENST00000577539 FKBP8Q14318 412 aa9.72□□□□□ -0.85
VAPA-203ENST00000577539 MYCNP04198 464 aaPredicted RBP9.7□□□□□ -0.86
VAPA-203ENST00000577539 PROM2Q8N271 834 aa9.49□□□□□ -0.89
VAPA-203ENST00000577539 U3KPZ7 1027 aaPredicted RBP9.47□□□□□ -0.89
VAPA-203ENST00000577539 SHROOM4Q9ULL8 1493 aa9.41□□□□□ -0.9
VAPA-203ENST00000577539 MKRN4PQ13434 485 aaPredicted RBP9.4□□□□□ -0.91
VAPA-203ENST00000577539 DCAF8L2P0C7V8 631 aa9.28□□□□□ -0.92
VAPA-203ENST00000577539 SUPT5HO00267 1087 aaKnown RBP9.27□□□□□ -0.93
VAPA-203ENST00000577539 PLCB2Q00722 1185 aa9.26□□□□□ -0.93
VAPA-203ENST00000577539 IFNLR1Q8IU57 520 aaPredicted RBP9.25□□□□□ -0.93
VAPA-203ENST00000577539 ZNF219Q9P2Y4 722 aaPredicted RBP9.24□□□□□ -0.93
VAPA-203ENST00000577539 PKD2Q13563 968 aa9.23□□□□□ -0.93
VAPA-203ENST00000577539 SAMD1Q6SPF0 538 aaPredicted RBP9.19□□□□□ -0.94
VAPA-203ENST00000577539 SPDYE4A6NLX3 237 aa9.12□□□□□ -0.95
VAPA-203ENST00000577539 VASPP50552 380 aaPredicted RBP9.11□□□□□ -0.95
VAPA-203ENST00000577539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.11□□□□□ -0.95
VAPA-203ENST00000577539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.09□□□□□ -0.96
VAPA-203ENST00000577539 HNRNPUL2Q1KMD3 747 aaKnown RBP9.09□□□□□ -0.96
VAPA-203ENST00000577539 KDM2AQ9Y2K7 1162 aa9.09□□□□□ -0.96
VAPA-203ENST00000577539 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
VAPA-203ENST00000577539 NPM1P06748 294 aaKnown RBP eCLIP9.07□□□□□ -0.96
VAPA-203ENST00000577539 ZCCHC6Q5VYS8 1495 aaKnown RBP9.05□□□□□ -0.96
VAPA-203ENST00000577539 CCDC180Q9P1Z9 1646 aa9□□□□□ -0.97
VAPA-203ENST00000577539 FBXO3Q9UK99 471 aa8.99□□□□□ -0.97
VAPA-203ENST00000577539 SPINK5Q9NQ38 1064 aaPredicted RBP8.99□□□□□ -0.97
VAPA-203ENST00000577539 FBLN2P98095 1184 aa8.98□□□□□ -0.97
VAPA-203ENST00000577539 DCAF8L1A6NGE4 600 aa8.96□□□□□ -0.98
VAPA-203ENST00000577539 TAOK2Q9UL54 1235 aa8.95□□□□□ -0.98
VAPA-203ENST00000577539 DNAJC5Q9H3Z4 198 aa8.91□□□□□ -0.98
VAPA-203ENST00000577539 VSIG10Q8N0Z9 540 aa8.89□□□□□ -0.99
VAPA-203ENST00000577539 HAP1P54257 671 aaPredicted RBP8.87□□□□□ -0.99
VAPA-203ENST00000577539 POLA2Q14181 598 aa8.86□□□□□ -0.99
VAPA-203ENST00000577539 RNF39Q9H2S5 420 aa8.86□□□□□ -0.99
VAPA-203ENST00000577539 RGL2O15211 777 aa8.84□□□□□ -1
VAPA-203ENST00000577539 BCANQ96GW7 911 aa8.82□□□□□ -1
VAPA-203ENST00000577539 BBXQ8WY36 941 aaPredicted RBP8.79□□□□□ -1
VAPA-203ENST00000577539 DAXXQ9UER7 740 aaPredicted RBP8.79□□□□□ -1
VAPA-203ENST00000577539 MYO15BQ96JP2 1530 aa8.76□□□□□ -1.01
VAPA-203ENST00000577539 SSUH2Q9Y2M2 353 aa8.75□□□□□ -1.01
VAPA-203ENST00000577539 TSHZ2Q9NRE2 1034 aa8.73□□□□□ -1.01
VAPA-203ENST00000577539 RNF25Q96BH1 459 aaPredicted RBP8.73□□□□□ -1.01
VAPA-203ENST00000577539 PCGF6Q9BYE7 350 aa8.71□□□□□ -1.02
VAPA-203ENST00000577539 DCAF1Q9Y4B6 1507 aa8.71□□□□□ -1.02
VAPA-203ENST00000577539 LOC105371045A0A1W2PR82 267 aa8.69□□□□□ -1.02
VAPA-203ENST00000577539 TPRNQ4KMQ1 711 aa8.69□□□□□ -1.02
VAPA-203ENST00000577539 TRHP20396 242 aaPredicted RBP8.69□□□□□ -1.02
VAPA-203ENST00000577539 SPOCK2Q92563 424 aa8.68□□□□□ -1.02
VAPA-203ENST00000577539 NKX1-1Q15270 411 aaPredicted RBP8.67□□□□□ -1.02
VAPA-203ENST00000577539 PAXIP1Q6ZW49 1069 aaPredicted RBP8.66□□□□□ -1.02
VAPA-203ENST00000577539 APLP2Q06481 763 aa8.65□□□□□ -1.02
VAPA-203ENST00000577539 ECM2O94769 699 aaPredicted RBP8.65□□□□□ -1.03
VAPA-203ENST00000577539 DSG3P32926 999 aa8.63□□□□□ -1.03
VAPA-203ENST00000577539 SCRIBQ14160 1630 aa8.62□□□□□ -1.03
VAPA-203ENST00000577539 HRCP23327 699 aa8.61□□□□□ -1.03
VAPA-203ENST00000577539 FAM9AQ8IZU1 332 aaPredicted RBP8.61□□□□□ -1.03
VAPA-203ENST00000577539 ABCC9O60706 1549 aa8.61□□□□□ -1.03
VAPA-203ENST00000577539 ABCB7O75027 752 aa8.59□□□□□ -1.03
VAPA-203ENST00000577539 OSCARQ8IYS5 282 aa8.59□□□□□ -1.03
VAPA-203ENST00000577539 TRIM41Q8WV44 630 aa8.59□□□□□ -1.04
VAPA-203ENST00000577539 HS6ST3Q8IZP7 471 aa8.56□□□□□ -1.04
VAPA-203ENST00000577539 CFAP44Q96MT7 982 aa8.56□□□□□ -1.04
VAPA-203ENST00000577539 C1QBPQ07021 282 aaKnown RBP8.55□□□□□ -1.04
VAPA-203ENST00000577539 RSF1Q96T23 1441 aaPredicted RBP8.55□□□□□ -1.04
VAPA-203ENST00000577539 CAPN15O75808 1086 aa8.55□□□□□ -1.04
VAPA-203ENST00000577539 TIMELESSQ9UNS1 1208 aa8.54□□□□□ -1.04
VAPA-203ENST00000577539 MNX1P50219 401 aaPredicted RBP8.53□□□□□ -1.04
VAPA-203ENST00000577539 STAG3Q9UJ98 1225 aa8.52□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms