RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 AEBP2Q6ZN18 517 aaPredicted RBP25.37■■□□□ 1.65
USP48-215ENST00000534705 CHIC1Q5VXU3 224 aa23.92■■□□□ 1.42
USP48-215ENST00000534705 SENP3Q9H4L4 574 aaPredicted RBP21.81■■□□□ 1.08
USP48-215ENST00000534705 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
USP48-215ENST00000534705 FOXD1Q16676 465 aa20.28■□□□□ 0.84
USP48-215ENST00000534705 MSH5O43196 834 aa19.19■□□□□ 0.66
USP48-215ENST00000534705 POTEDQ86YR6 584 aa19.1■□□□□ 0.65
USP48-215ENST00000534705 PLPPR3Q6T4P5 718 aa19.03■□□□□ 0.64
USP48-215ENST00000534705 PIAS4Q8N2W9 510 aaPredicted RBP18.92■□□□□ 0.62
USP48-215ENST00000534705 PPP6R1Q9UPN7 881 aa18.71■□□□□ 0.59
USP48-215ENST00000534705 ADRA2BP18089 450 aa18.66■□□□□ 0.58
USP48-215ENST00000534705 SCAF1Q9H7N4 1312 aaKnown RBP17.24■□□□□ 0.35
USP48-215ENST00000534705 DMRT2Q9Y5R5 561 aa17.23■□□□□ 0.35
USP48-215ENST00000534705 MAPK8IP2Q13387 824 aaPredicted RBP17.2■□□□□ 0.34
USP48-215ENST00000534705 PPP4R3CPQ6ZMV5 832 aa16.61■□□□□ 0.25
USP48-215ENST00000534705 CACNB1Q02641 598 aaPredicted RBP16.6■□□□□ 0.25
USP48-215ENST00000534705 DCAF8L1A6NGE4 600 aa16.53■□□□□ 0.24
USP48-215ENST00000534705 HOXD11P31277 338 aaPredicted RBP16.5■□□□□ 0.23
USP48-215ENST00000534705 CNKSR2Q8WXI2 1034 aa16.41■□□□□ 0.22
USP48-215ENST00000534705 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
USP48-215ENST00000534705 RNF39Q9H2S5 420 aa16.28■□□□□ 0.2
USP48-215ENST00000534705 C1QBPQ07021 282 aaKnown RBP16.1■□□□□ 0.17
USP48-215ENST00000534705 DNAJC5BQ9UF47 199 aa16.07■□□□□ 0.16
USP48-215ENST00000534705 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
USP48-215ENST00000534705 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.74■□□□□ 0.119e-9■□□□□ 9.8
USP48-215ENST00000534705 NPM3O75607 178 aaKnown RBP15.63■□□□□ 0.09
USP48-215ENST00000534705 U3KPZ7 1027 aaPredicted RBP15.31■□□□□ 0.04
USP48-215ENST00000534705 CAPN15O75808 1086 aa15.2■□□□□ 0.02
USP48-215ENST00000534705 DSG3P32926 999 aa15.16■□□□□ 0.02
USP48-215ENST00000534705 SPINK5Q9NQ38 1064 aaPredicted RBP15.14■□□□□ 0.01
USP48-215ENST00000534705 KCNA4P22459 653 aa15.06■□□□□ 0
USP48-215ENST00000534705 APLP2Q06481 763 aa15.03■□□□□ -0
USP48-215ENST00000534705 SLC4A2P04920 1241 aa14.97□□□□□ -0.01
USP48-215ENST00000534705 POTEHQ6S545 545 aa14.94□□□□□ -0.02
USP48-215ENST00000534705 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.92□□□□□ -0.02
USP48-215ENST00000534705 HNRNPUL2Q1KMD3 747 aaKnown RBP14.92□□□□□ -0.02
USP48-215ENST00000534705 ZNF219Q9P2Y4 722 aaPredicted RBP14.9□□□□□ -0.02
USP48-215ENST00000534705 TRHP20396 242 aaPredicted RBP14.88□□□□□ -0.03
USP48-215ENST00000534705 SAMD1Q6SPF0 538 aaPredicted RBP14.79□□□□□ -0.04
USP48-215ENST00000534705 ABCB7O75027 752 aa14.77□□□□□ -0.05
USP48-215ENST00000534705 RBM42Q9BTD8 480 aaKnown RBP14.56□□□□□ -0.08
USP48-215ENST00000534705 MYCNP04198 464 aaPredicted RBP14.53□□□□□ -0.08
USP48-215ENST00000534705 POLA2Q14181 598 aa14.42□□□□□ -0.1
USP48-215ENST00000534705 CHRDL2Q6WN34 429 aa14.28□□□□□ -0.12
USP48-215ENST00000534705 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
USP48-215ENST00000534705 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
USP48-215ENST00000534705 ZBTB12Q9Y330 459 aaPredicted RBP14.2□□□□□ -0.14
USP48-215ENST00000534705 AKT1S1Q96B36 256 aa14.14□□□□□ -0.15
USP48-215ENST00000534705 ATF5Q9Y2D1 282 aaPredicted RBP14.09□□□□□ -0.15
USP48-215ENST00000534705 REM2Q8IYK8 340 aaPredicted RBP13.96□□□□□ -0.17
USP48-215ENST00000534705 OSCARQ8IYS5 282 aa13.92□□□□□ -0.18
USP48-215ENST00000534705 SP7Q8TDD2 431 aaPredicted RBP13.89□□□□□ -0.19
USP48-215ENST00000534705 ATXN8OSP0DMR3 200 aa13.86□□□□□ -0.19
USP48-215ENST00000534705 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
USP48-215ENST00000534705 PITPNM1O00562 1244 aa13.79□□□□□ -0.2
USP48-215ENST00000534705 ZBTB22O15209 634 aa13.78□□□□□ -0.2
USP48-215ENST00000534705 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP48-215ENST00000534705 HAX1O00165 279 aa13.72□□□□□ -0.21
USP48-215ENST00000534705 FBLN2P98095 1184 aa13.72□□□□□ -0.21
USP48-215ENST00000534705 SPDYE2BA6NHP3 402 aa13.7□□□□□ -0.22
USP48-215ENST00000534705 SPDYE6P0CI01 402 aa13.7□□□□□ -0.22
USP48-215ENST00000534705 SPDYE2Q495Y8 402 aa13.7□□□□□ -0.22
USP48-215ENST00000534705 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
USP48-215ENST00000534705 CLEC11AQ9Y240 323 aa13.49□□□□□ -0.25
USP48-215ENST00000534705 ZNF692Q9BU19 519 aaPredicted RBP13.47□□□□□ -0.25
USP48-215ENST00000534705 PRKAR2AP13861 404 aaKnown RBP13.46□□□□□ -0.25
USP48-215ENST00000534705 MKRN4PQ13434 485 aaPredicted RBP13.45□□□□□ -0.26
USP48-215ENST00000534705 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
USP48-215ENST00000534705 EVX2Q03828 476 aa13.42□□□□□ -0.26
USP48-215ENST00000534705 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
USP48-215ENST00000534705 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
USP48-215ENST00000534705 PABPN1Q86U42 306 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP48-215ENST00000534705 GABBR2O75899 941 aa13.19□□□□□ -0.3
USP48-215ENST00000534705 CHADLQ6NUI6 762 aa13.19□□□□□ -0.3
USP48-215ENST00000534705 CLCN6P51797 869 aa13.04□□□□□ -0.32
USP48-215ENST00000534705 LHX8Q68G74 356 aa13.03□□□□□ -0.32
USP48-215ENST00000534705 FARP1Q9Y4F1 1045 aaPredicted RBP13.03□□□□□ -0.32
USP48-215ENST00000534705 CD44P16070 742 aaKnown RBP13.02□□□□□ -0.33
USP48-215ENST00000534705 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
USP48-215ENST00000534705 STAG3Q9UJ98 1225 aa12.92□□□□□ -0.34
USP48-215ENST00000534705 POTEIP0CG38 1075 aa12.84□□□□□ -0.35
USP48-215ENST00000534705 DCBLD2Q96PD2 775 aa12.83□□□□□ -0.36
USP48-215ENST00000534705 ZNF579Q8NAF0 562 aaKnown RBP12.81□□□□□ -0.36
USP48-215ENST00000534705 CREBZFQ9NS37 354 aa12.8□□□□□ -0.36
USP48-215ENST00000534705 ZRANB1Q9UGI0 708 aa12.8□□□□□ -0.36
USP48-215ENST00000534705 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
USP48-215ENST00000534705 PAK3O75914 559 aaPredicted RBP12.71□□□□□ -0.37
USP48-215ENST00000534705 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP48-215ENST00000534705 GALR2O43603 387 aaPredicted RBP12.62□□□□□ -0.39
USP48-215ENST00000534705 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
USP48-215ENST00000534705 PHF12Q96QT6 1004 aa12.54□□□□□ -0.4
USP48-215ENST00000534705 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.41
USP48-215ENST00000534705 OTUD5Q96G74 571 aa12.45□□□□□ -0.42
USP48-215ENST00000534705 POTEB2H3BUK9 544 aa12.41□□□□□ -0.42
USP48-215ENST00000534705 ASTLQ6HA08 431 aaPredicted RBP12.39□□□□□ -0.43
USP48-215ENST00000534705 PLSCR2Q9NRY7 297 aa12.39□□□□□ -0.43
USP48-215ENST00000534705 PELP1Q8IZL8 1130 aaKnown RBP12.38□□□□□ -0.43
USP48-215ENST00000534705 SLC39A7Q92504 469 aa12.38□□□□□ -0.43
USP48-215ENST00000534705 MS4A3Q96HJ5 214 aa12.38□□□□□ -0.43
USP48-215ENST00000534705 C7P10643 843 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms