RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 NISCHQ9Y2I1 1504 aa35.7■■■■□ 3.31
HMGCS1-203ENST00000507004 CCDC180Q9P1Z9 1646 aa31.99■■■□□ 2.71
HMGCS1-203ENST00000507004 ABCC9O60706 1549 aa31.65■■■□□ 2.66
HMGCS1-203ENST00000507004 RB1CC1Q8TDY2 1594 aa30.36■■■□□ 2.45
HMGCS1-203ENST00000507004 NACADO15069 1562 aa30.23■■■□□ 2.43
HMGCS1-203ENST00000507004 DCAF8L2P0C7V8 631 aa29.98■■■□□ 2.39
HMGCS1-203ENST00000507004 MYO15BQ96JP2 1530 aa29.95■■■□□ 2.38
HMGCS1-203ENST00000507004 ZCCHC6Q5VYS8 1495 aaKnown RBP29.63■■■□□ 2.33
HMGCS1-203ENST00000507004 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
HMGCS1-203ENST00000507004 UNC13AQ9UPW8 1703 aa29.49■■■□□ 2.31
HMGCS1-203ENST00000507004 PABPN1Q86U42 306 aaKnown RBP eCLIP29.48■■■□□ 2.31
HMGCS1-203ENST00000507004 DNAJC5BQ9UF47 199 aa29.43■■■□□ 2.3
HMGCS1-203ENST00000507004 BICRAQ9NZM4 1560 aa29.33■■■□□ 2.29
HMGCS1-203ENST00000507004 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
HMGCS1-203ENST00000507004 SCRIBQ14160 1630 aa29.02■■■□□ 2.24
HMGCS1-203ENST00000507004 EIF4G1Q04637 1599 aaKnown RBP28.66■■■□□ 2.18
HMGCS1-203ENST00000507004 CC2D2AQ9P2K1 1620 aa28.63■■■□□ 2.17
HMGCS1-203ENST00000507004 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
HMGCS1-203ENST00000507004 NCAPD3P42695 1498 aa27.89■■■□□ 2.05
HMGCS1-203ENST00000507004 SMARCA2P51531 1590 aa27.78■■■□□ 2.04
HMGCS1-203ENST00000507004 SMARCA4P51532 1647 aa27.78■■■□□ 2.04
HMGCS1-203ENST00000507004 ATAD2BQ9ULI0 1458 aa27.77■■■□□ 2.04
HMGCS1-203ENST00000507004 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
HMGCS1-203ENST00000507004 HMGXB3Q12766 1538 aa27.7■■■□□ 2.02
HMGCS1-203ENST00000507004 PEG3Q9GZU2 1588 aa27.57■■■□□ 2
HMGCS1-203ENST00000507004 BAZ1BQ9UIG0 1483 aaKnown RBP27.54■■■□□ 2
HMGCS1-203ENST00000507004 MROH2BQ7Z745 1585 aa27.43■■□□□ 1.98
HMGCS1-203ENST00000507004 ERCC6Q03468 1493 aa27.41■■□□□ 1.98
HMGCS1-203ENST00000507004 CUX2O14529 1486 aa27.35■■□□□ 1.97
HMGCS1-203ENST00000507004 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
HMGCS1-203ENST00000507004 NESP48681 1621 aa27.2■■□□□ 1.95
HMGCS1-203ENST00000507004 PDS5BQ9NTI5 1447 aa27.1■■□□□ 1.93
HMGCS1-203ENST00000507004 WIZO95785 1651 aa27.08■■□□□ 1.92
HMGCS1-203ENST00000507004 DNAJC5Q9H3Z4 198 aa27.04■■□□□ 1.92
HMGCS1-203ENST00000507004 CADPSQ9ULU8 1353 aa27.04■■□□□ 1.92
HMGCS1-203ENST00000507004 RSF1Q96T23 1441 aaPredicted RBP26.99■■□□□ 1.91
HMGCS1-203ENST00000507004 THOC2Q8NI27 1593 aaKnown RBP26.95■■□□□ 1.9
HMGCS1-203ENST00000507004 KIF21AQ7Z4S6 1674 aa26.88■■□□□ 1.89
HMGCS1-203ENST00000507004 TOP2AP11388 1531 aaKnown RBP26.87■■□□□ 1.89
HMGCS1-203ENST00000507004 MRC2Q9UBG0 1479 aa26.79■■□□□ 1.88
HMGCS1-203ENST00000507004 CFTRP13569 1480 aa26.76■■□□□ 1.87
HMGCS1-203ENST00000507004 CEP164Q9UPV0 1460 aa26.73■■□□□ 1.87
HMGCS1-203ENST00000507004 WDR62O43379 1518 aa26.7■■□□□ 1.86
HMGCS1-203ENST00000507004 FANCD2Q9BXW9 1451 aa26.69■■□□□ 1.86
HMGCS1-203ENST00000507004 CCDC88BA6NC98 1476 aa26.51■■□□□ 1.83
HMGCS1-203ENST00000507004 PRDM2Q13029 1718 aa26.48■■□□□ 1.83
HMGCS1-203ENST00000507004 URB2Q14146 1524 aaKnown RBP26.39■■□□□ 1.82
HMGCS1-203ENST00000507004 ABCC8Q09428 1581 aa26.31■■□□□ 1.8
HMGCS1-203ENST00000507004 IFT140Q96RY7 1462 aa26.22■■□□□ 1.79
HMGCS1-203ENST00000507004 TOPBP1Q92547 1522 aa26.19■■□□□ 1.78
HMGCS1-203ENST00000507004 DNMBPQ6XZF7 1577 aa26.15■■□□□ 1.78
HMGCS1-203ENST00000507004 OSCARQ8IYS5 282 aa26.13■■□□□ 1.77
HMGCS1-203ENST00000507004 ZNF608Q9ULD9 1512 aaPredicted RBP26.01■■□□□ 1.75
HMGCS1-203ENST00000507004 POLA1P09884 1462 aaPredicted RBP25.94■■□□□ 1.74
HMGCS1-203ENST00000507004 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
HMGCS1-203ENST00000507004 EIF4G3O43432 1585 aaKnown RBP25.91■■□□□ 1.74
HMGCS1-203ENST00000507004 SUPT5HO00267 1087 aaKnown RBP25.9■■□□□ 1.74
HMGCS1-203ENST00000507004 SOGA1O94964 1423 aa25.86■■□□□ 1.73
HMGCS1-203ENST00000507004 TRIM41Q8WV44 630 aa25.85■■□□□ 1.73
HMGCS1-203ENST00000507004 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
HMGCS1-203ENST00000507004 AQRO60306 1485 aaKnown RBP eCLIP25.82■■□□□ 1.724e-7■■■■■ 31.5
HMGCS1-203ENST00000507004 FGD5Q6ZNL6 1462 aa25.79■■□□□ 1.72
HMGCS1-203ENST00000507004 RAD54L2Q9Y4B4 1467 aa25.77■■□□□ 1.72
HMGCS1-203ENST00000507004 CUX1P39880 1505 aa25.77■■□□□ 1.72
HMGCS1-203ENST00000507004 TDRD9Q8NDG6 1382 aaKnown RBP25.71■■□□□ 1.71
HMGCS1-203ENST00000507004 FBLN2P98095 1184 aa25.65■■□□□ 1.7
HMGCS1-203ENST00000507004 CHD1O14646 1710 aa25.65■■□□□ 1.7
HMGCS1-203ENST00000507004 RIMBP3CA6NJZ7 1639 aa25.64■■□□□ 1.7
HMGCS1-203ENST00000507004 RIMBP3BA6NNM3 1639 aa25.64■■□□□ 1.7
HMGCS1-203ENST00000507004 RIMBP3Q9UFD9 1639 aa25.64■■□□□ 1.7
HMGCS1-203ENST00000507004 GRIN2BQ13224 1484 aa25.64■■□□□ 1.69
HMGCS1-203ENST00000507004 MAGI1Q96QZ7 1491 aaPredicted RBP25.64■■□□□ 1.69
HMGCS1-203ENST00000507004 ARHGEF11O15085 1522 aa25.63■■□□□ 1.69
HMGCS1-203ENST00000507004 SNAPC4Q5SXM2 1469 aa25.6■■□□□ 1.69
HMGCS1-203ENST00000507004 ABCA10Q8WWZ4 1543 aa25.58■■□□□ 1.68
HMGCS1-203ENST00000507004 CHMP7Q8WUX9 453 aaPredicted RBP25.57■■□□□ 1.68
HMGCS1-203ENST00000507004 WRNQ14191 1432 aaPredicted RBP eCLIP25.54■■□□□ 1.68
HMGCS1-203ENST00000507004 GAPVD1Q14C86 1478 aa25.54■■□□□ 1.68
HMGCS1-203ENST00000507004 SYNJ2O15056 1496 aa25.53■■□□□ 1.68
HMGCS1-203ENST00000507004 SYNJ1O43426 1573 aa25.5■■□□□ 1.67
HMGCS1-203ENST00000507004 TOP2BQ02880 1626 aa25.48■■□□□ 1.67
HMGCS1-203ENST00000507004 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
HMGCS1-203ENST00000507004 BIVM-ERCC5R4GMW8 1640 aa25.46■■□□□ 1.67
HMGCS1-203ENST00000507004 PBRM1Q86U86 1689 aa25.45■■□□□ 1.66
HMGCS1-203ENST00000507004 CYB5RLQ6IPT4 315 aa25.42■■□□□ 1.66
HMGCS1-203ENST00000507004 CLASP1Q7Z460 1538 aa25.42■■□□□ 1.66
HMGCS1-203ENST00000507004 ARAP1Q96P48 1450 aa25.35■■□□□ 1.65
HMGCS1-203ENST00000507004 ERICH3Q5RHP9 1530 aa25.28■■□□□ 1.64
HMGCS1-203ENST00000507004 FHAD1B1AJZ9 1412 aa25.28■■□□□ 1.64
HMGCS1-203ENST00000507004 GRIN2AQ12879 1464 aa25.28■■□□□ 1.64
HMGCS1-203ENST00000507004 ADAMTS12P58397 1594 aa25.26■■□□□ 1.63
HMGCS1-203ENST00000507004 NUP160Q12769 1436 aa25.2■■□□□ 1.62
HMGCS1-203ENST00000507004 CEP170Q5SW79 1584 aa25.1■■□□□ 1.61
HMGCS1-203ENST00000507004 TRHP20396 242 aaPredicted RBP25.09■■□□□ 1.61
HMGCS1-203ENST00000507004 KIF27Q86VH2 1401 aa25.06■■□□□ 1.6
HMGCS1-203ENST00000507004 SHROOM2Q13796 1616 aa25.02■■□□□ 1.6
HMGCS1-203ENST00000507004 IGF1RP08069 1367 aa24.95■■□□□ 1.59
HMGCS1-203ENST00000507004 JPH4Q96JJ6 628 aa24.95■■□□□ 1.58
HMGCS1-203ENST00000507004 CUL7Q14999 1698 aa24.94■■□□□ 1.58
HMGCS1-203ENST00000507004 ERCC6L2Q5T890 1561 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms