Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NPHP3Q7Z494 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 AGGF1P1-201ENST00000509500 2073 ntBASIC19.74■□□□□ 0.75
NPHP3Q7Z494 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 RN7SL767P-201ENST00000493013 295 ntBASIC19.74■□□□□ 0.75
NPHP3Q7Z494 RN7SL564P-201ENST00000496309 250 ntBASIC19.74■□□□□ 0.75
NPHP3Q7Z494 RBM4-207ENST00000506523 654 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 HINT1-205ENST00000508488 703 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 AL133467.4-201ENST00000602953 725 ntBASIC19.74■□□□□ 0.75
NPHP3Q7Z494 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.74■□□□□ 0.75
NPHP3Q7Z494 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 HLA-DPA2-205ENST00000433582 733 ntBASIC19.73■□□□□ 0.75
NPHP3Q7Z494 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 IGHV1-12-201ENST00000518307 205 ntBASIC19.73■□□□□ 0.75
NPHP3Q7Z494 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 GOLGA2P7-209ENST00000560408 745 ntBASIC19.73■□□□□ 0.75
NPHP3Q7Z494 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 AC090386.2-201ENST00000623010 1039 ntBASIC19.73■□□□□ 0.75
NPHP3Q7Z494 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP3Q7Z494 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 WASH3P-207ENST00000560956 1394 ntBASIC19.72■□□□□ 0.75
NPHP3Q7Z494 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP3Q7Z494 AC008972.2-201ENST00000606587 494 ntBASIC19.72■□□□□ 0.75
NPHP3Q7Z494 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms