RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 NISCHQ9Y2I1 1504 aa30.08■■■□□ 2.41
SCN3B-202ENST00000392770 DCAF8L2P0C7V8 631 aa29.52■■■□□ 2.32
SCN3B-202ENST00000392770 SUPT5HO00267 1087 aaKnown RBP28.06■■■□□ 2.08
SCN3B-202ENST00000392770 SHROOM4Q9ULL8 1493 aa28.04■■■□□ 2.08
SCN3B-202ENST00000392770 EHMT2Q96KQ7 1210 aa26.85■■□□□ 1.89
SCN3B-202ENST00000392770 FAM9AQ8IZU1 332 aaPredicted RBP26.35■■□□□ 1.81
SCN3B-202ENST00000392770 APLP2Q06481 763 aa26.11■■□□□ 1.77
SCN3B-202ENST00000392770 TRIM41Q8WV44 630 aa26.07■■□□□ 1.76
SCN3B-202ENST00000392770 TTBK1Q5TCY1 1321 aaPredicted RBP25.88■■□□□ 1.73
SCN3B-202ENST00000392770 PCGF6Q9BYE7 350 aa25.8■■□□□ 1.72
SCN3B-202ENST00000392770 RANGAP1P46060 587 aaPredicted RBP25.77■■□□□ 1.72
SCN3B-202ENST00000392770 ABCC9O60706 1549 aa25.65■■□□□ 1.7
SCN3B-202ENST00000392770 UBTFP17480 764 aaKnown RBP25.57■■□□□ 1.68
SCN3B-202ENST00000392770 ATP1B4Q9UN42 357 aaPredicted RBP25.42■■□□□ 1.66
SCN3B-202ENST00000392770 CHIC1Q5VXU3 224 aa25.28■■□□□ 1.64
SCN3B-202ENST00000392770 CCER1Q8TC90 406 aaPredicted RBP25.24■■□□□ 1.63
SCN3B-202ENST00000392770 PABPN1Q86U42 306 aaKnown RBP eCLIP25.21■■□□□ 1.63
SCN3B-202ENST00000392770 ZEB1P37275 1124 aaPredicted RBP25.2■■□□□ 1.62
SCN3B-202ENST00000392770 PPARGC1BQ86YN6 1023 aaKnown RBP25.16■■□□□ 1.62
SCN3B-202ENST00000392770 LOC105371045A0A1W2PR82 267 aa25.1■■□□□ 1.61
SCN3B-202ENST00000392770 CCDC180Q9P1Z9 1646 aa25.09■■□□□ 1.61
SCN3B-202ENST00000392770 ZCCHC6Q5VYS8 1495 aaKnown RBP25.01■■□□□ 1.59
SCN3B-202ENST00000392770 TRIM26Q12899 539 aaPredicted RBP24.96■■□□□ 1.59
SCN3B-202ENST00000392770 PELP1Q8IZL8 1130 aaKnown RBP24.94■■□□□ 1.58
SCN3B-202ENST00000392770 SCRIBQ14160 1630 aa24.87■■□□□ 1.57
SCN3B-202ENST00000392770 CENPBP07199 599 aaPredicted RBP24.63■■□□□ 1.53
SCN3B-202ENST00000392770 ITGAEP38570 1179 aa24.62■■□□□ 1.53
SCN3B-202ENST00000392770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.6■■□□□ 1.53
SCN3B-202ENST00000392770 HNRNPUL2Q1KMD3 747 aaKnown RBP24.6■■□□□ 1.53
SCN3B-202ENST00000392770 HRCP23327 699 aa24.53■■□□□ 1.52
SCN3B-202ENST00000392770 YTHDC1Q96MU7 727 aaKnown RBP24.39■■□□□ 1.49
SCN3B-202ENST00000392770 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
SCN3B-202ENST00000392770 MYT1LQ9UL68 1186 aa24.29■■□□□ 1.48
SCN3B-202ENST00000392770 FAM50AQ14320 339 aaKnown RBP24.17■■□□□ 1.46
SCN3B-202ENST00000392770 NACADO15069 1562 aa24.12■■□□□ 1.45
SCN3B-202ENST00000392770 CSRNP3Q8WYN3 585 aa24.11■■□□□ 1.45
SCN3B-202ENST00000392770 NEFLP07196 543 aa24.06■■□□□ 1.44
SCN3B-202ENST00000392770 POLR3GLQ9BT43 218 aa24.02■■□□□ 1.44
SCN3B-202ENST00000392770 FBLN2P98095 1184 aa24.01■■□□□ 1.43
SCN3B-202ENST00000392770 RSF1Q96T23 1441 aaPredicted RBP23.93■■□□□ 1.42
SCN3B-202ENST00000392770 P3H3Q8IVL6 736 aa23.92■■□□□ 1.42
SCN3B-202ENST00000392770 DCAF1Q9Y4B6 1507 aa23.89■■□□□ 1.41
SCN3B-202ENST00000392770 TRIM52Q96A61 297 aa23.89■■□□□ 1.41
SCN3B-202ENST00000392770 ERICH6Q7L0X2 663 aa23.87■■□□□ 1.41
SCN3B-202ENST00000392770 NEUROD1Q13562 356 aa23.8■■□□□ 1.4
SCN3B-202ENST00000392770 DIEXFQ68CQ4 756 aaKnown RBP23.78■■□□□ 1.4
SCN3B-202ENST00000392770 CNGB1Q14028 1251 aaPredicted RBP23.77■■□□□ 1.4
SCN3B-202ENST00000392770 ARID3CA6NKF2 412 aa23.75■■□□□ 1.39
SCN3B-202ENST00000392770 BAZ1BQ9UIG0 1483 aaKnown RBP23.64■■□□□ 1.38
SCN3B-202ENST00000392770 MYO15BQ96JP2 1530 aa23.63■■□□□ 1.37
SCN3B-202ENST00000392770 BAZ1AQ9NRL2 1556 aaPredicted RBP23.6■■□□□ 1.37
SCN3B-202ENST00000392770 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
SCN3B-202ENST00000392770 SLC4A1APQ9BWU0 796 aaKnown RBP23.54■■□□□ 1.36
SCN3B-202ENST00000392770 ZNF326Q5BKZ1 582 aaKnown RBP23.5■■□□□ 1.35
SCN3B-202ENST00000392770 ZNF777Q9ULD5 760 aaPredicted RBP23.48■■□□□ 1.35
SCN3B-202ENST00000392770 CDK11AQ9UQ88 783 aaPredicted RBP23.46■■□□□ 1.35
SCN3B-202ENST00000392770 WRNQ14191 1432 aaPredicted RBP eCLIP23.45■■□□□ 1.35
SCN3B-202ENST00000392770 ZNF316A6NFI3 1004 aaPredicted RBP23.42■■□□□ 1.34
SCN3B-202ENST00000392770 EEA1Q15075 1411 aa23.39■■□□□ 1.33
SCN3B-202ENST00000392770 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
SCN3B-202ENST00000392770 CLIP1P30622 1438 aa23.38■■□□□ 1.33
SCN3B-202ENST00000392770 MROH2BQ7Z745 1585 aa23.32■■□□□ 1.32
SCN3B-202ENST00000392770 ANP32CO43423 234 aa23.32■■□□□ 1.32
SCN3B-202ENST00000392770 CEP162Q5TB80 1403 aa23.3■■□□□ 1.32
SCN3B-202ENST00000392770 CHMP7Q8WUX9 453 aaPredicted RBP23.23■■□□□ 1.31
SCN3B-202ENST00000392770 KIF27Q86VH2 1401 aa23.21■■□□□ 1.31
SCN3B-202ENST00000392770 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
SCN3B-202ENST00000392770 MTUS2Q5JR59 1369 aa23.17■■□□□ 1.3
SCN3B-202ENST00000392770 CCDC88BA6NC98 1476 aa23.16■■□□□ 1.3
SCN3B-202ENST00000392770 CHIC2Q9UKJ5 165 aa23.15■■□□□ 1.3
SCN3B-202ENST00000392770 TNIKQ9UKE5 1360 aa23.14■■□□□ 1.29
SCN3B-202ENST00000392770 TONSLQ96HA7 1378 aa23.13■■□□□ 1.29
SCN3B-202ENST00000392770 WIZO95785 1651 aa23.12■■□□□ 1.29
SCN3B-202ENST00000392770 MYT1Q01538 1121 aa23.12■■□□□ 1.29
SCN3B-202ENST00000392770 SMARCA2P51531 1590 aa23.1■■□□□ 1.29
SCN3B-202ENST00000392770 DAXXQ9UER7 740 aaPredicted RBP23.1■■□□□ 1.29
SCN3B-202ENST00000392770 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
SCN3B-202ENST00000392770 NPM1P06748 294 aaKnown RBP eCLIP23.05■■□□□ 1.28
SCN3B-202ENST00000392770 TOP2AP11388 1531 aaKnown RBP23.03■■□□□ 1.28
SCN3B-202ENST00000392770 GTF3C3Q9Y5Q9 886 aa23.03■■□□□ 1.28
SCN3B-202ENST00000392770 SOGA1O94964 1423 aa23.02■■□□□ 1.28
SCN3B-202ENST00000392770 ERCC6Q03468 1493 aa23.01■■□□□ 1.27
SCN3B-202ENST00000392770 BCANQ96GW7 911 aa22.99■■□□□ 1.27
SCN3B-202ENST00000392770 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.93■■□□□ 1.26
SCN3B-202ENST00000392770 CUX2O14529 1486 aa22.93■■□□□ 1.26
SCN3B-202ENST00000392770 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
SCN3B-202ENST00000392770 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
SCN3B-202ENST00000392770 CHGAP10645 457 aaKnown RBP22.88■■□□□ 1.25
SCN3B-202ENST00000392770 SMARCA4P51532 1647 aa22.88■■□□□ 1.25
SCN3B-202ENST00000392770 CLSPNQ9HAW4 1339 aa22.87■■□□□ 1.25
SCN3B-202ENST00000392770 RRP7BPQ9NSQ0 103 aa22.87■■□□□ 1.25
SCN3B-202ENST00000392770 ESF1Q9H501 851 aaKnown RBP22.84■■□□□ 1.25
SCN3B-202ENST00000392770 ACIN1Q9UKV3 1341 aaKnown RBP22.84■■□□□ 1.25
SCN3B-202ENST00000392770 CARMIL1Q5VZK9 1371 aa22.84■■□□□ 1.25
SCN3B-202ENST00000392770 DDX10Q13206 875 aaKnown RBP22.83■■□□□ 1.24
SCN3B-202ENST00000392770 EIF4G1Q04637 1599 aaKnown RBP22.82■■□□□ 1.24
SCN3B-202ENST00000392770 PLEKHD1A6NEE1 506 aa22.81■■□□□ 1.24
SCN3B-202ENST00000392770 KCNH8Q96L42 1107 aa22.79■■□□□ 1.24
SCN3B-202ENST00000392770 STAG3Q9UJ98 1225 aa22.78■■□□□ 1.24
SCN3B-202ENST00000392770 ATAD2BQ9ULI0 1458 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms