RNA–Protein interactions for RNA: ENST00000556285.1

TGFB3-204, Transcript of transforming growth factor beta 3, humanhuman

TSL 1 (best) BASIC

Gene TGFB3, Length 1,280 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFB3-204ENST00000556285 NISCHQ9Y2I1 1504 aa33.53■■■□□ 2.96
TGFB3-204ENST00000556285 ABCC9O60706 1549 aa30.29■■■□□ 2.44
TGFB3-204ENST00000556285 CCDC180Q9P1Z9 1646 aa30.17■■■□□ 2.42
TGFB3-204ENST00000556285 RB1CC1Q8TDY2 1594 aa28.7■■■□□ 2.18
TGFB3-204ENST00000556285 DNAJC5BQ9UF47 199 aa28.57■■■□□ 2.16
TGFB3-204ENST00000556285 NACADO15069 1562 aa28.46■■■□□ 2.15
TGFB3-204ENST00000556285 UNC13AQ9UPW8 1703 aa28.35■■■□□ 2.13
TGFB3-204ENST00000556285 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
TGFB3-204ENST00000556285 PABPN1Q86U42 306 aaKnown RBP eCLIP28.15■■■□□ 2.1
TGFB3-204ENST00000556285 BICRAQ9NZM4 1560 aa28.04■■■□□ 2.08
TGFB3-204ENST00000556285 MYO15BQ96JP2 1530 aa27.99■■■□□ 2.07
TGFB3-204ENST00000556285 ZCCHC6Q5VYS8 1495 aaKnown RBP27.79■■■□□ 2.04
TGFB3-204ENST00000556285 DCAF1Q9Y4B6 1507 aa27.63■■■□□ 2.01
TGFB3-204ENST00000556285 SCRIBQ14160 1630 aa27.55■■■□□ 2
TGFB3-204ENST00000556285 CC2D2AQ9P2K1 1620 aa27.39■■□□□ 1.98
TGFB3-204ENST00000556285 SHROOM4Q9ULL8 1493 aa27.38■■□□□ 1.97
TGFB3-204ENST00000556285 EIF4G1Q04637 1599 aaKnown RBP27.27■■□□□ 1.96
TGFB3-204ENST00000556285 CECR2Q9BXF3 1484 aa27.23■■□□□ 1.95
TGFB3-204ENST00000556285 NCAPD3P42695 1498 aa26.27■■□□□ 1.8
TGFB3-204ENST00000556285 SMARCA4P51532 1647 aa26.24■■□□□ 1.79
TGFB3-204ENST00000556285 ATAD2BQ9ULI0 1458 aa26.23■■□□□ 1.79
TGFB3-204ENST00000556285 DNAJC5Q9H3Z4 198 aa26.15■■□□□ 1.78
TGFB3-204ENST00000556285 HMGXB3Q12766 1538 aa26.1■■□□□ 1.77
TGFB3-204ENST00000556285 SMARCA2P51531 1590 aa26.09■■□□□ 1.77
TGFB3-204ENST00000556285 NESP48681 1621 aa26.06■■□□□ 1.76
TGFB3-204ENST00000556285 CUX2O14529 1486 aa26.04■■□□□ 1.76
TGFB3-204ENST00000556285 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
TGFB3-204ENST00000556285 BAZ1AQ9NRL2 1556 aaPredicted RBP25.99■■□□□ 1.75
TGFB3-204ENST00000556285 PEG3Q9GZU2 1588 aa25.94■■□□□ 1.74
TGFB3-204ENST00000556285 BAZ1BQ9UIG0 1483 aaKnown RBP25.93■■□□□ 1.74
TGFB3-204ENST00000556285 MROH2BQ7Z745 1585 aa25.91■■□□□ 1.74
TGFB3-204ENST00000556285 THOC2Q8NI27 1593 aaKnown RBP25.82■■□□□ 1.72
TGFB3-204ENST00000556285 KIF21AQ7Z4S6 1674 aa25.77■■□□□ 1.72
TGFB3-204ENST00000556285 LAMC3Q9Y6N6 1575 aa25.73■■□□□ 1.71
TGFB3-204ENST00000556285 WIZO95785 1651 aa25.66■■□□□ 1.7
TGFB3-204ENST00000556285 PDS5BQ9NTI5 1447 aa25.47■■□□□ 1.67
TGFB3-204ENST00000556285 CADPSQ9ULU8 1353 aa25.44■■□□□ 1.66
TGFB3-204ENST00000556285 MRC2Q9UBG0 1479 aa25.36■■□□□ 1.65
TGFB3-204ENST00000556285 WDR62O43379 1518 aa25.36■■□□□ 1.65
TGFB3-204ENST00000556285 RSF1Q96T23 1441 aaPredicted RBP25.26■■□□□ 1.63
TGFB3-204ENST00000556285 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
TGFB3-204ENST00000556285 FANCD2Q9BXW9 1451 aa25.21■■□□□ 1.63
TGFB3-204ENST00000556285 TOP2AP11388 1531 aaKnown RBP25.2■■□□□ 1.62
TGFB3-204ENST00000556285 CFTRP13569 1480 aa25.18■■□□□ 1.62
TGFB3-204ENST00000556285 URB2Q14146 1524 aaKnown RBP25.09■■□□□ 1.61
TGFB3-204ENST00000556285 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
TGFB3-204ENST00000556285 TRIM41Q8WV44 630 aa24.99■■□□□ 1.59
TGFB3-204ENST00000556285 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
TGFB3-204ENST00000556285 ZNF608Q9ULD9 1512 aaPredicted RBP24.81■■□□□ 1.56
TGFB3-204ENST00000556285 TOPBP1Q92547 1522 aa24.76■■□□□ 1.55
TGFB3-204ENST00000556285 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
TGFB3-204ENST00000556285 IFT140Q96RY7 1462 aa24.7■■□□□ 1.54
TGFB3-204ENST00000556285 RIMBP3CA6NJZ7 1639 aa24.68■■□□□ 1.54
TGFB3-204ENST00000556285 RIMBP3BA6NNM3 1639 aa24.68■■□□□ 1.54
TGFB3-204ENST00000556285 RIMBP3Q9UFD9 1639 aa24.68■■□□□ 1.54
TGFB3-204ENST00000556285 EIF4G3O43432 1585 aaKnown RBP24.68■■□□□ 1.54
TGFB3-204ENST00000556285 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
TGFB3-204ENST00000556285 TARBP1Q13395 1621 aaKnown RBP24.61■■□□□ 1.53
TGFB3-204ENST00000556285 CHD1O14646 1710 aa24.59■■□□□ 1.53
TGFB3-204ENST00000556285 ABCC8Q09428 1581 aa24.53■■□□□ 1.52
TGFB3-204ENST00000556285 AQRO60306 1485 aaKnown RBP eCLIP24.52■■□□□ 1.52
TGFB3-204ENST00000556285 ARHGEF11O15085 1522 aa24.52■■□□□ 1.52
TGFB3-204ENST00000556285 POLA1P09884 1462 aaPredicted RBP24.5■■□□□ 1.51
TGFB3-204ENST00000556285 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.51
TGFB3-204ENST00000556285 CUX1P39880 1505 aa24.35■■□□□ 1.49
TGFB3-204ENST00000556285 FGD5Q6ZNL6 1462 aa24.33■■□□□ 1.49
TGFB3-204ENST00000556285 TDRD9Q8NDG6 1382 aaKnown RBP24.32■■□□□ 1.48
TGFB3-204ENST00000556285 SOGA1O94964 1423 aa24.31■■□□□ 1.48
TGFB3-204ENST00000556285 ARAP1Q96P48 1450 aa24.31■■□□□ 1.48
TGFB3-204ENST00000556285 WDR97A6NE52 1622 aa24.29■■□□□ 1.48
TGFB3-204ENST00000556285 SNAPC4Q5SXM2 1469 aa24.27■■□□□ 1.48
TGFB3-204ENST00000556285 FBLN2P98095 1184 aa24.26■■□□□ 1.47
TGFB3-204ENST00000556285 CYB5RLQ6IPT4 315 aa24.25■■□□□ 1.47
TGFB3-204ENST00000556285 CLASP1Q7Z460 1538 aa24.21■■□□□ 1.47
TGFB3-204ENST00000556285 PBRM1Q86U86 1689 aa24.2■■□□□ 1.46
TGFB3-204ENST00000556285 SUPT5HO00267 1087 aaKnown RBP24.15■■□□□ 1.46
TGFB3-204ENST00000556285 GRIN2BQ13224 1484 aa24.11■■□□□ 1.45
TGFB3-204ENST00000556285 MAGI1Q96QZ7 1491 aaPredicted RBP24.11■■□□□ 1.45
TGFB3-204ENST00000556285 SYNJ1O43426 1573 aa24.09■■□□□ 1.45
TGFB3-204ENST00000556285 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.45
TGFB3-204ENST00000556285 SYNJ2O15056 1496 aa24.05■■□□□ 1.44
TGFB3-204ENST00000556285 GAPVD1Q14C86 1478 aa24.03■■□□□ 1.44
TGFB3-204ENST00000556285 CHMP7Q8WUX9 453 aaPredicted RBP24.02■■□□□ 1.44
TGFB3-204ENST00000556285 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
TGFB3-204ENST00000556285 TRHP20396 242 aaPredicted RBP23.97■■□□□ 1.43
TGFB3-204ENST00000556285 BIVM-ERCC5R4GMW8 1640 aa23.94■■□□□ 1.42
TGFB3-204ENST00000556285 ERCC6L2Q5T890 1561 aa23.94■■□□□ 1.42
TGFB3-204ENST00000556285 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
TGFB3-204ENST00000556285 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
TGFB3-204ENST00000556285 CEP170Q5SW79 1584 aa23.87■■□□□ 1.41
TGFB3-204ENST00000556285 GRIN2AQ12879 1464 aa23.85■■□□□ 1.41
TGFB3-204ENST00000556285 WRNQ14191 1432 aaPredicted RBP eCLIP23.8■■□□□ 1.4
TGFB3-204ENST00000556285 NUP160Q12769 1436 aa23.77■■□□□ 1.4
TGFB3-204ENST00000556285 SHROOM2Q13796 1616 aa23.77■■□□□ 1.4
TGFB3-204ENST00000556285 ERICH3Q5RHP9 1530 aa23.69■■□□□ 1.38
TGFB3-204ENST00000556285 FHAD1B1AJZ9 1412 aa23.68■■□□□ 1.38
TGFB3-204ENST00000556285 KIF13AQ9H1H9 1805 aa23.6■■□□□ 1.37
TGFB3-204ENST00000556285 RUSC2Q8N2Y8 1516 aa23.57■■□□□ 1.36
TGFB3-204ENST00000556285 CHIC1Q5VXU3 224 aa23.53■■□□□ 1.36
TGFB3-204ENST00000556285 PRG4Q92954 1404 aaPredicted RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms