RNA–Protein interactions for RNA: ENST00000515662.6

THUMPD3-210, Transcript of THUMP domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene THUMPD3, Length 2,390 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THUMPD3-210ENST00000515662 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
THUMPD3-210ENST00000515662 CCDC180Q9P1Z9 1646 aa29.79■■■□□ 2.36
THUMPD3-210ENST00000515662 ZCCHC6Q5VYS8 1495 aaKnown RBP28.92■■■□□ 2.22
THUMPD3-210ENST00000515662 DCAF1Q9Y4B6 1507 aa28.38■■■□□ 2.13
THUMPD3-210ENST00000515662 DCAF8L2P0C7V8 631 aa28.33■■■□□ 2.13
THUMPD3-210ENST00000515662 SHROOM4Q9ULL8 1493 aa28.3■■■□□ 2.12
THUMPD3-210ENST00000515662 ABCC9O60706 1549 aa27.99■■■□□ 2.07
THUMPD3-210ENST00000515662 MYO15BQ96JP2 1530 aa27.93■■■□□ 2.06
THUMPD3-210ENST00000515662 NACADO15069 1562 aa27.69■■■□□ 2.02
THUMPD3-210ENST00000515662 SCRIBQ14160 1630 aa27.5■■□□□ 1.99
THUMPD3-210ENST00000515662 RB1CC1Q8TDY2 1594 aa27.39■■□□□ 1.98
THUMPD3-210ENST00000515662 SUPT5HO00267 1087 aaKnown RBP27.36■■□□□ 1.97
THUMPD3-210ENST00000515662 UNC13AQ9UPW8 1703 aa26.88■■□□□ 1.89
THUMPD3-210ENST00000515662 RSF1Q96T23 1441 aaPredicted RBP26.79■■□□□ 1.88
THUMPD3-210ENST00000515662 CECR2Q9BXF3 1484 aa26.72■■□□□ 1.87
THUMPD3-210ENST00000515662 BICRAQ9NZM4 1560 aa26.6■■□□□ 1.85
THUMPD3-210ENST00000515662 MROH2BQ7Z745 1585 aa26.59■■□□□ 1.85
THUMPD3-210ENST00000515662 BAZ1AQ9NRL2 1556 aaPredicted RBP26.5■■□□□ 1.83
THUMPD3-210ENST00000515662 PABPN1Q86U42 306 aaKnown RBP eCLIP26.48■■□□□ 1.83
THUMPD3-210ENST00000515662 WIZO95785 1651 aa26.39■■□□□ 1.81
THUMPD3-210ENST00000515662 SMARCA4P51532 1647 aa26.36■■□□□ 1.81
THUMPD3-210ENST00000515662 CHIC1Q5VXU3 224 aa26.33■■□□□ 1.81
THUMPD3-210ENST00000515662 TOP2AP11388 1531 aaKnown RBP26.09■■□□□ 1.77
THUMPD3-210ENST00000515662 PEG3Q9GZU2 1588 aa26.01■■□□□ 1.75
THUMPD3-210ENST00000515662 SMARCA2P51531 1590 aa25.87■■□□□ 1.73
THUMPD3-210ENST00000515662 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
THUMPD3-210ENST00000515662 ATAD2BQ9ULI0 1458 aa25.86■■□□□ 1.73
THUMPD3-210ENST00000515662 EIF4G1Q04637 1599 aaKnown RBP25.78■■□□□ 1.72
THUMPD3-210ENST00000515662 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
THUMPD3-210ENST00000515662 TRIM41Q8WV44 630 aa25.68■■□□□ 1.7
THUMPD3-210ENST00000515662 NCAPD3P42695 1498 aa25.58■■□□□ 1.69
THUMPD3-210ENST00000515662 HMGXB3Q12766 1538 aa25.55■■□□□ 1.68
THUMPD3-210ENST00000515662 ABCC8Q09428 1581 aa25.41■■□□□ 1.66
THUMPD3-210ENST00000515662 LOC105371045A0A1W2PR82 267 aa25.37■■□□□ 1.65
THUMPD3-210ENST00000515662 CC2D2AQ9P2K1 1620 aa25.32■■□□□ 1.64
THUMPD3-210ENST00000515662 FAM9AQ8IZU1 332 aaPredicted RBP25.25■■□□□ 1.63
THUMPD3-210ENST00000515662 WRNQ14191 1432 aaPredicted RBP eCLIP25.19■■□□□ 1.62
THUMPD3-210ENST00000515662 SYNJ1O43426 1573 aa25.1■■□□□ 1.61
THUMPD3-210ENST00000515662 CFTRP13569 1480 aa25.1■■□□□ 1.61
THUMPD3-210ENST00000515662 SOGA1O94964 1423 aa25.01■■□□□ 1.59
THUMPD3-210ENST00000515662 EEA1Q15075 1411 aa24.96■■□□□ 1.59
THUMPD3-210ENST00000515662 CADPSQ9ULU8 1353 aa24.95■■□□□ 1.58
THUMPD3-210ENST00000515662 TOP2BQ02880 1626 aa24.95■■□□□ 1.58
THUMPD3-210ENST00000515662 PRDM2Q13029 1718 aa24.95■■□□□ 1.58
THUMPD3-210ENST00000515662 BIVM-ERCC5R4GMW8 1640 aa24.91■■□□□ 1.58
THUMPD3-210ENST00000515662 EHMT2Q96KQ7 1210 aa24.91■■□□□ 1.58
THUMPD3-210ENST00000515662 RUSC2Q8N2Y8 1516 aa24.91■■□□□ 1.58
THUMPD3-210ENST00000515662 CUX1P39880 1505 aa24.84■■□□□ 1.57
THUMPD3-210ENST00000515662 CSRNP3Q8WYN3 585 aa24.83■■□□□ 1.57
THUMPD3-210ENST00000515662 FANCD2Q9BXW9 1451 aa24.68■■□□□ 1.54
THUMPD3-210ENST00000515662 NESP48681 1621 aa24.67■■□□□ 1.54
THUMPD3-210ENST00000515662 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
THUMPD3-210ENST00000515662 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
THUMPD3-210ENST00000515662 GOLGA3Q08378 1498 aa24.64■■□□□ 1.54
THUMPD3-210ENST00000515662 KIF21BO75037 1637 aa24.63■■□□□ 1.53
THUMPD3-210ENST00000515662 TNIKQ9UKE5 1360 aa24.63■■□□□ 1.53
THUMPD3-210ENST00000515662 CEP164Q9UPV0 1460 aa24.61■■□□□ 1.53
THUMPD3-210ENST00000515662 UBTFP17480 764 aaKnown RBP24.54■■□□□ 1.52
THUMPD3-210ENST00000515662 CEP162Q5TB80 1403 aa24.54■■□□□ 1.52
THUMPD3-210ENST00000515662 KIF27Q86VH2 1401 aa24.53■■□□□ 1.52
THUMPD3-210ENST00000515662 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
THUMPD3-210ENST00000515662 DNMBPQ6XZF7 1577 aa24.5■■□□□ 1.51
THUMPD3-210ENST00000515662 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
THUMPD3-210ENST00000515662 RAPGEF2Q9Y4G8 1499 aa24.47■■□□□ 1.51
THUMPD3-210ENST00000515662 PDS5BQ9NTI5 1447 aa24.45■■□□□ 1.51
THUMPD3-210ENST00000515662 TOPBP1Q92547 1522 aa24.45■■□□□ 1.5
THUMPD3-210ENST00000515662 PRXQ9BXM0 1461 aa24.44■■□□□ 1.5
THUMPD3-210ENST00000515662 CUX2O14529 1486 aa24.41■■□□□ 1.5
THUMPD3-210ENST00000515662 ERICH3Q5RHP9 1530 aa24.41■■□□□ 1.5
THUMPD3-210ENST00000515662 TRIM26Q12899 539 aaPredicted RBP24.39■■□□□ 1.49
THUMPD3-210ENST00000515662 URB2Q14146 1524 aaKnown RBP24.37■■□□□ 1.49
THUMPD3-210ENST00000515662 POLA1P09884 1462 aaPredicted RBP24.35■■□□□ 1.49
THUMPD3-210ENST00000515662 KIF21AQ7Z4S6 1674 aa24.35■■□□□ 1.49
THUMPD3-210ENST00000515662 IGF1RP08069 1367 aa24.3■■□□□ 1.48
THUMPD3-210ENST00000515662 RAD54L2Q9Y4B4 1467 aa24.3■■□□□ 1.48
THUMPD3-210ENST00000515662 ABCA10Q8WWZ4 1543 aa24.29■■□□□ 1.48
THUMPD3-210ENST00000515662 CLIP1P30622 1438 aa24.28■■□□□ 1.48
THUMPD3-210ENST00000515662 WDR97A6NE52 1622 aa24.18■■□□□ 1.46
THUMPD3-210ENST00000515662 CARMIL1Q5VZK9 1371 aa24.17■■□□□ 1.46
THUMPD3-210ENST00000515662 PPARGC1BQ86YN6 1023 aaKnown RBP24.16■■□□□ 1.46
THUMPD3-210ENST00000515662 MRC2Q9UBG0 1479 aa24.13■■□□□ 1.45
THUMPD3-210ENST00000515662 RANGAP1P46060 587 aaPredicted RBP24.1■■□□□ 1.45
THUMPD3-210ENST00000515662 VPS8Q8N3P4 1428 aa24.1■■□□□ 1.45
THUMPD3-210ENST00000515662 ABCA5Q8WWZ7 1642 aa24.07■■□□□ 1.44
THUMPD3-210ENST00000515662 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
THUMPD3-210ENST00000515662 CUL7Q14999 1698 aa24.05■■□□□ 1.44
THUMPD3-210ENST00000515662 TDRD9Q8NDG6 1382 aaKnown RBP24.04■■□□□ 1.44
THUMPD3-210ENST00000515662 ARAP1Q96P48 1450 aa24.01■■□□□ 1.43
THUMPD3-210ENST00000515662 GAPVD1Q14C86 1478 aa24.01■■□□□ 1.43
THUMPD3-210ENST00000515662 HRCP23327 699 aa24■■□□□ 1.43
THUMPD3-210ENST00000515662 WDR62O43379 1518 aa23.99■■□□□ 1.43
THUMPD3-210ENST00000515662 ARHGAP35Q9NRY4 1499 aa23.95■■□□□ 1.42
THUMPD3-210ENST00000515662 ERCC6Q03468 1493 aa23.94■■□□□ 1.42
THUMPD3-210ENST00000515662 TTBK1Q5TCY1 1321 aaPredicted RBP23.91■■□□□ 1.42
THUMPD3-210ENST00000515662 IFT140Q96RY7 1462 aa23.88■■□□□ 1.41
THUMPD3-210ENST00000515662 THOC2Q8NI27 1593 aaKnown RBP23.86■■□□□ 1.41
THUMPD3-210ENST00000515662 APLP2Q06481 763 aa23.85■■□□□ 1.41
THUMPD3-210ENST00000515662 PBRM1Q86U86 1689 aa23.84■■□□□ 1.41
THUMPD3-210ENST00000515662 AQRO60306 1485 aaKnown RBP eCLIP23.84■■□□□ 1.418e-7■■■□□ 16.1
THUMPD3-210ENST00000515662 CTTNBP2Q8WZ74 1663 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms