RNA–Protein interactions for RNA: ENST00000616789.4

UPK1A-203, Transcript of uroplakin 1A, humanhuman

TSL 5 BASIC

Gene UPK1A, Length 1,366 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1A-203ENST00000616789 NISCHQ9Y2I1 1504 aa33.74■■■□□ 2.99
UPK1A-203ENST00000616789 CCDC180Q9P1Z9 1646 aa30■■■□□ 2.39
UPK1A-203ENST00000616789 ABCC9O60706 1549 aa29.44■■■□□ 2.3
UPK1A-203ENST00000616789 RB1CC1Q8TDY2 1594 aa28.25■■■□□ 2.11
UPK1A-203ENST00000616789 NACADO15069 1562 aa28.23■■■□□ 2.11
UPK1A-203ENST00000616789 MYO15BQ96JP2 1530 aa28.09■■■□□ 2.09
UPK1A-203ENST00000616789 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
UPK1A-203ENST00000616789 ZCCHC6Q5VYS8 1495 aaKnown RBP28.08■■■□□ 2.09
UPK1A-203ENST00000616789 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
UPK1A-203ENST00000616789 UNC13AQ9UPW8 1703 aa27.72■■■□□ 2.03
UPK1A-203ENST00000616789 BICRAQ9NZM4 1560 aa27.54■■■□□ 2
UPK1A-203ENST00000616789 PABPN1Q86U42 306 aaKnown RBP eCLIP27.52■■■□□ 2
UPK1A-203ENST00000616789 SCRIBQ14160 1630 aa27.33■■□□□ 1.97
UPK1A-203ENST00000616789 DNAJC5BQ9UF47 199 aa27.29■■□□□ 1.96
UPK1A-203ENST00000616789 SHROOM4Q9ULL8 1493 aa27.12■■□□□ 1.93
UPK1A-203ENST00000616789 EIF4G1Q04637 1599 aaKnown RBP26.75■■□□□ 1.87
UPK1A-203ENST00000616789 CC2D2AQ9P2K1 1620 aa26.66■■□□□ 1.86
UPK1A-203ENST00000616789 CECR2Q9BXF3 1484 aa26.47■■□□□ 1.83
UPK1A-203ENST00000616789 SMARCA4P51532 1647 aa26.18■■□□□ 1.78
UPK1A-203ENST00000616789 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
UPK1A-203ENST00000616789 BAZ1AQ9NRL2 1556 aaPredicted RBP26.09■■□□□ 1.77
UPK1A-203ENST00000616789 ATAD2BQ9ULI0 1458 aa26.08■■□□□ 1.77
UPK1A-203ENST00000616789 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
UPK1A-203ENST00000616789 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
UPK1A-203ENST00000616789 PEG3Q9GZU2 1588 aa25.98■■□□□ 1.75
UPK1A-203ENST00000616789 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
UPK1A-203ENST00000616789 BAZ1BQ9UIG0 1483 aaKnown RBP25.79■■□□□ 1.72
UPK1A-203ENST00000616789 WIZO95785 1651 aa25.71■■□□□ 1.71
UPK1A-203ENST00000616789 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
UPK1A-203ENST00000616789 NESP48681 1621 aa25.51■■□□□ 1.67
UPK1A-203ENST00000616789 TOP2AP11388 1531 aaKnown RBP25.39■■□□□ 1.66
UPK1A-203ENST00000616789 LAMC3Q9Y6N6 1575 aa25.37■■□□□ 1.65
UPK1A-203ENST00000616789 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
UPK1A-203ENST00000616789 ERCC6Q03468 1493 aa25.29■■□□□ 1.64
UPK1A-203ENST00000616789 PDS5BQ9NTI5 1447 aa25.17■■□□□ 1.62
UPK1A-203ENST00000616789 KIF21AQ7Z4S6 1674 aa25.16■■□□□ 1.62
UPK1A-203ENST00000616789 CFTRP13569 1480 aa25.16■■□□□ 1.62
UPK1A-203ENST00000616789 CUX2O14529 1486 aa25.15■■□□□ 1.62
UPK1A-203ENST00000616789 CCDC88BA6NC98 1476 aa25.14■■□□□ 1.62
UPK1A-203ENST00000616789 THOC2Q8NI27 1593 aaKnown RBP25.13■■□□□ 1.61
UPK1A-203ENST00000616789 FANCD2Q9BXW9 1451 aa24.98■■□□□ 1.59
UPK1A-203ENST00000616789 MRC2Q9UBG0 1479 aa24.94■■□□□ 1.58
UPK1A-203ENST00000616789 CEP164Q9UPV0 1460 aa24.93■■□□□ 1.58
UPK1A-203ENST00000616789 PRDM2Q13029 1718 aa24.91■■□□□ 1.58
UPK1A-203ENST00000616789 WDR62O43379 1518 aa24.9■■□□□ 1.58
UPK1A-203ENST00000616789 SUPT5HO00267 1087 aaKnown RBP24.82■■□□□ 1.56
UPK1A-203ENST00000616789 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
UPK1A-203ENST00000616789 TOPBP1Q92547 1522 aa24.59■■□□□ 1.53
UPK1A-203ENST00000616789 DNAJC5Q9H3Z4 198 aa24.58■■□□□ 1.53
UPK1A-203ENST00000616789 ABCC8Q09428 1581 aa24.54■■□□□ 1.52
UPK1A-203ENST00000616789 DNMBPQ6XZF7 1577 aa24.53■■□□□ 1.52
UPK1A-203ENST00000616789 IFT140Q96RY7 1462 aa24.43■■□□□ 1.5
UPK1A-203ENST00000616789 CUX1P39880 1505 aa24.4■■□□□ 1.5
UPK1A-203ENST00000616789 ZNF608Q9ULD9 1512 aaPredicted RBP24.4■■□□□ 1.5
UPK1A-203ENST00000616789 POLA1P09884 1462 aaPredicted RBP24.39■■□□□ 1.5
UPK1A-203ENST00000616789 TARBP1Q13395 1621 aaKnown RBP24.38■■□□□ 1.49
UPK1A-203ENST00000616789 RAD54L2Q9Y4B4 1467 aa24.29■■□□□ 1.48
UPK1A-203ENST00000616789 FGD5Q6ZNL6 1462 aa24.29■■□□□ 1.48
UPK1A-203ENST00000616789 SOGA1O94964 1423 aa24.26■■□□□ 1.47
UPK1A-203ENST00000616789 EIF4G3O43432 1585 aaKnown RBP24.24■■□□□ 1.47
UPK1A-203ENST00000616789 AQRO60306 1485 aaKnown RBP eCLIP24.23■■□□□ 1.47
UPK1A-203ENST00000616789 TDRD9Q8NDG6 1382 aaKnown RBP24.15■■□□□ 1.46
UPK1A-203ENST00000616789 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.46
UPK1A-203ENST00000616789 SYNJ1O43426 1573 aa24.14■■□□□ 1.46
UPK1A-203ENST00000616789 BIVM-ERCC5R4GMW8 1640 aa24.14■■□□□ 1.45
UPK1A-203ENST00000616789 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
UPK1A-203ENST00000616789 TOP2BQ02880 1626 aa24.13■■□□□ 1.45
UPK1A-203ENST00000616789 OSCARQ8IYS5 282 aa24.09■■□□□ 1.45
UPK1A-203ENST00000616789 ABCA10Q8WWZ4 1543 aa24.07■■□□□ 1.44
UPK1A-203ENST00000616789 ABCA5Q8WWZ7 1642 aa23.99■■□□□ 1.43
UPK1A-203ENST00000616789 GAPVD1Q14C86 1478 aa23.97■■□□□ 1.43
UPK1A-203ENST00000616789 GRIN2BQ13224 1484 aa23.97■■□□□ 1.43
UPK1A-203ENST00000616789 CHD1O14646 1710 aa23.96■■□□□ 1.43
UPK1A-203ENST00000616789 SNAPC4Q5SXM2 1469 aa23.96■■□□□ 1.43
UPK1A-203ENST00000616789 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
UPK1A-203ENST00000616789 PBRM1Q86U86 1689 aa23.92■■□□□ 1.42
UPK1A-203ENST00000616789 FBLN2P98095 1184 aa23.84■■□□□ 1.41
UPK1A-203ENST00000616789 SYNJ2O15056 1496 aa23.84■■□□□ 1.41
UPK1A-203ENST00000616789 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
UPK1A-203ENST00000616789 ERICH3Q5RHP9 1530 aa23.76■■□□□ 1.39
UPK1A-203ENST00000616789 CLASP1Q7Z460 1538 aa23.75■■□□□ 1.39
UPK1A-203ENST00000616789 RIMBP3CA6NJZ7 1639 aa23.74■■□□□ 1.39
UPK1A-203ENST00000616789 RIMBP3BA6NNM3 1639 aa23.74■■□□□ 1.39
UPK1A-203ENST00000616789 RIMBP3Q9UFD9 1639 aa23.74■■□□□ 1.39
UPK1A-203ENST00000616789 ADAMTS12P58397 1594 aa23.74■■□□□ 1.39
UPK1A-203ENST00000616789 ARHGEF11O15085 1522 aa23.72■■□□□ 1.39
UPK1A-203ENST00000616789 FHAD1B1AJZ9 1412 aa23.69■■□□□ 1.38
UPK1A-203ENST00000616789 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
UPK1A-203ENST00000616789 IGF1RP08069 1367 aa23.65■■□□□ 1.38
UPK1A-203ENST00000616789 NUP160Q12769 1436 aa23.62■■□□□ 1.37
UPK1A-203ENST00000616789 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
UPK1A-203ENST00000616789 CEP170Q5SW79 1584 aa23.6■■□□□ 1.37
UPK1A-203ENST00000616789 TRIM41Q8WV44 630 aa23.58■■□□□ 1.37
UPK1A-203ENST00000616789 ARAP1Q96P48 1450 aa23.54■■□□□ 1.36
UPK1A-203ENST00000616789 RUSC2Q8N2Y8 1516 aa23.5■■□□□ 1.35
UPK1A-203ENST00000616789 CUL7Q14999 1698 aa23.48■■□□□ 1.35
UPK1A-203ENST00000616789 CYB5RLQ6IPT4 315 aa23.48■■□□□ 1.35
UPK1A-203ENST00000616789 SHROOM2Q13796 1616 aa23.46■■□□□ 1.35
UPK1A-203ENST00000616789 ERCC6L2Q5T890 1561 aa23.44■■□□□ 1.34
UPK1A-203ENST00000616789 CARMIL1Q5VZK9 1371 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms