Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.2■□□□□ 0.66
COL3A1P02461 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC19.19■□□□□ 0.66
COL3A1P02461 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.19■□□□□ 0.66
COL3A1P02461 Z97180.1-201ENST00000445173 988 ntBASIC19.19■□□□□ 0.66
COL3A1P02461 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.19■□□□□ 0.66
COL3A1P02461 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.19■□□□□ 0.66
COL3A1P02461 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.19■□□□□ 0.66
COL3A1P02461 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
COL3A1P02461 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC19.19■□□□□ 0.66
COL3A1P02461 AC007191.1-201ENST00000623179 2995 ntBASIC19.19■□□□□ 0.66
COL3A1P02461 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.19■□□□□ 0.66
COL3A1P02461 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL3A1P02461 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.18■□□□□ 0.66
COL3A1P02461 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.18■□□□□ 0.66
COL3A1P02461 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.18■□□□□ 0.66
COL3A1P02461 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.18■□□□□ 0.66
COL3A1P02461 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 MAX-218ENST00000557746 571 ntTSL 4 BASIC19.18■□□□□ 0.66
COL3A1P02461 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 TBC1D3J-201ENST00000620719 1426 ntBASIC19.18■□□□□ 0.66
COL3A1P02461 LINC01815-202ENST00000641468 1409 ntBASIC19.18■□□□□ 0.66
COL3A1P02461 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
COL3A1P02461 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC19.18■□□□□ 0.66
COL3A1P02461 AL022313.4-201ENST00000562756 2046 ntBASIC19.18■□□□□ 0.66
COL3A1P02461 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC19.18■□□□□ 0.66
COL3A1P02461 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL3A1P02461 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL3A1P02461 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL3A1P02461 HSPA8P5-201ENST00000456928 2069 ntBASIC19.17■□□□□ 0.66
COL3A1P02461 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 TUBB8P4-201ENST00000511806 1324 ntBASIC19.17■□□□□ 0.66
COL3A1P02461 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC19.17■□□□□ 0.66
COL3A1P02461 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC19.17■□□□□ 0.66
COL3A1P02461 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL3A1P02461 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL3A1P02461 AL133466.1-201ENST00000447582 150 ntBASIC19.17■□□□□ 0.66
COL3A1P02461 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.17■□□□□ 0.66
COL3A1P02461 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.17■□□□□ 0.66
COL3A1P02461 PRKXP1-201ENST00000561423 1122 ntBASIC19.17■□□□□ 0.66
COL3A1P02461 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC19.17■□□□□ 0.66
COL3A1P02461 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC19.17■□□□□ 0.66
COL3A1P02461 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC19.17■□□□□ 0.66
COL3A1P02461 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms