RNA–Protein interactions for RNA: ENST00000228827.7

GPN3-201, Transcript of GPN-loop GTPase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPN3, Length 1,468 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-201ENST00000228827 NISCHQ9Y2I1 1504 aa35■■■■□ 3.19
GPN3-201ENST00000228827 CCDC180Q9P1Z9 1646 aa31.17■■■□□ 2.58
GPN3-201ENST00000228827 ABCC9O60706 1549 aa30.98■■■□□ 2.55
GPN3-201ENST00000228827 RB1CC1Q8TDY2 1594 aa29.56■■■□□ 2.32
GPN3-201ENST00000228827 DCAF8L2P0C7V8 631 aa29.55■■■□□ 2.32
GPN3-201ENST00000228827 NACADO15069 1562 aa29.42■■■□□ 2.3
GPN3-201ENST00000228827 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
GPN3-201ENST00000228827 ZCCHC6Q5VYS8 1495 aaKnown RBP29.09■■■□□ 2.25
GPN3-201ENST00000228827 PABPN1Q86U42 306 aaKnown RBP eCLIP28.95■■■□□ 2.22
GPN3-201ENST00000228827 DCAF1Q9Y4B6 1507 aa28.88■■■□□ 2.21
GPN3-201ENST00000228827 UNC13AQ9UPW8 1703 aa28.81■■■□□ 2.2
GPN3-201ENST00000228827 DNAJC5BQ9UF47 199 aa28.76■■■□□ 2.19
GPN3-201ENST00000228827 BICRAQ9NZM4 1560 aa28.68■■■□□ 2.18
GPN3-201ENST00000228827 SCRIBQ14160 1630 aa28.54■■■□□ 2.16
GPN3-201ENST00000228827 SHROOM4Q9ULL8 1493 aa28.29■■■□□ 2.12
GPN3-201ENST00000228827 EIF4G1Q04637 1599 aaKnown RBP27.97■■■□□ 2.07
GPN3-201ENST00000228827 CC2D2AQ9P2K1 1620 aa27.94■■■□□ 2.06
GPN3-201ENST00000228827 CECR2Q9BXF3 1484 aa27.85■■■□□ 2.05
GPN3-201ENST00000228827 SMARCA4P51532 1647 aa27.22■■□□□ 1.95
GPN3-201ENST00000228827 NCAPD3P42695 1498 aa27.19■■□□□ 1.94
GPN3-201ENST00000228827 ATAD2BQ9ULI0 1458 aa27.18■■□□□ 1.94
GPN3-201ENST00000228827 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.93
GPN3-201ENST00000228827 SMARCA2P51531 1590 aa27.09■■□□□ 1.93
GPN3-201ENST00000228827 MROH2BQ7Z745 1585 aa27■■□□□ 1.91
GPN3-201ENST00000228827 HMGXB3Q12766 1538 aa27■■□□□ 1.91
GPN3-201ENST00000228827 BAZ1BQ9UIG0 1483 aaKnown RBP26.95■■□□□ 1.91
GPN3-201ENST00000228827 PEG3Q9GZU2 1588 aa26.91■■□□□ 1.9
GPN3-201ENST00000228827 ERCC6Q03468 1493 aa26.72■■□□□ 1.87
GPN3-201ENST00000228827 NESP48681 1621 aa26.71■■□□□ 1.87
GPN3-201ENST00000228827 WIZO95785 1651 aa26.67■■□□□ 1.86
GPN3-201ENST00000228827 RSF1Q96T23 1441 aaPredicted RBP26.58■■□□□ 1.85
GPN3-201ENST00000228827 LAMC3Q9Y6N6 1575 aa26.5■■□□□ 1.83
GPN3-201ENST00000228827 CUX2O14529 1486 aa26.49■■□□□ 1.83
GPN3-201ENST00000228827 CADPSQ9ULU8 1353 aa26.42■■□□□ 1.82
GPN3-201ENST00000228827 PDS5BQ9NTI5 1447 aa26.38■■□□□ 1.81
GPN3-201ENST00000228827 TOP2AP11388 1531 aaKnown RBP26.36■■□□□ 1.81
GPN3-201ENST00000228827 THOC2Q8NI27 1593 aaKnown RBP26.3■■□□□ 1.8
GPN3-201ENST00000228827 KIF21AQ7Z4S6 1674 aa26.29■■□□□ 1.8
GPN3-201ENST00000228827 CFTRP13569 1480 aa26.17■■□□□ 1.78
GPN3-201ENST00000228827 MRC2Q9UBG0 1479 aa26.14■■□□□ 1.77
GPN3-201ENST00000228827 FANCD2Q9BXW9 1451 aa26.12■■□□□ 1.77
GPN3-201ENST00000228827 CEP164Q9UPV0 1460 aa26.11■■□□□ 1.77
GPN3-201ENST00000228827 DNAJC5Q9H3Z4 198 aa26.11■■□□□ 1.77
GPN3-201ENST00000228827 CCDC88BA6NC98 1476 aa26.09■■□□□ 1.77
GPN3-201ENST00000228827 WDR62O43379 1518 aa26.02■■□□□ 1.76
GPN3-201ENST00000228827 URB2Q14146 1524 aaKnown RBP25.88■■□□□ 1.73
GPN3-201ENST00000228827 PRDM2Q13029 1718 aa25.81■■□□□ 1.72
GPN3-201ENST00000228827 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
GPN3-201ENST00000228827 TOPBP1Q92547 1522 aa25.65■■□□□ 1.7
GPN3-201ENST00000228827 ABCC8Q09428 1581 aa25.58■■□□□ 1.68
GPN3-201ENST00000228827 DNMBPQ6XZF7 1577 aa25.56■■□□□ 1.68
GPN3-201ENST00000228827 IFT140Q96RY7 1462 aa25.56■■□□□ 1.68
GPN3-201ENST00000228827 ZNF608Q9ULD9 1512 aaPredicted RBP25.52■■□□□ 1.68
GPN3-201ENST00000228827 POLA1P09884 1462 aaPredicted RBP25.42■■□□□ 1.66
GPN3-201ENST00000228827 OSCARQ8IYS5 282 aa25.39■■□□□ 1.65
GPN3-201ENST00000228827 RAD54L2Q9Y4B4 1467 aa25.36■■□□□ 1.65
GPN3-201ENST00000228827 TARBP1Q13395 1621 aaKnown RBP25.36■■□□□ 1.65
GPN3-201ENST00000228827 AQRO60306 1485 aaKnown RBP eCLIP25.35■■□□□ 1.65
GPN3-201ENST00000228827 EIF4G3O43432 1585 aaKnown RBP25.35■■□□□ 1.65
GPN3-201ENST00000228827 CUX1P39880 1505 aa25.35■■□□□ 1.65
GPN3-201ENST00000228827 SOGA1O94964 1423 aa25.33■■□□□ 1.65
GPN3-201ENST00000228827 FGD5Q6ZNL6 1462 aa25.32■■□□□ 1.64
GPN3-201ENST00000228827 TDRD9Q8NDG6 1382 aaKnown RBP25.26■■□□□ 1.63
GPN3-201ENST00000228827 TRIM41Q8WV44 630 aa25.21■■□□□ 1.63
GPN3-201ENST00000228827 FBLN2P98095 1184 aa25.16■■□□□ 1.62
GPN3-201ENST00000228827 SNAPC4Q5SXM2 1469 aa25.09■■□□□ 1.61
GPN3-201ENST00000228827 WDR97A6NE52 1622 aa25.08■■□□□ 1.61
GPN3-201ENST00000228827 WRNQ14191 1432 aaPredicted RBP eCLIP25.07■■□□□ 1.6
GPN3-201ENST00000228827 CHD1O14646 1710 aa25.06■■□□□ 1.6
GPN3-201ENST00000228827 GRIN2BQ13224 1484 aa25.05■■□□□ 1.6
GPN3-201ENST00000228827 ABCA10Q8WWZ4 1543 aa25.02■■□□□ 1.6
GPN3-201ENST00000228827 SYNJ1O43426 1573 aa25.02■■□□□ 1.6
GPN3-201ENST00000228827 GAPVD1Q14C86 1478 aa25.02■■□□□ 1.6
GPN3-201ENST00000228827 TOP2BQ02880 1626 aa25■■□□□ 1.59
GPN3-201ENST00000228827 CHMP7Q8WUX9 453 aaPredicted RBP25■■□□□ 1.59
GPN3-201ENST00000228827 MAGI1Q96QZ7 1491 aaPredicted RBP24.99■■□□□ 1.59
GPN3-201ENST00000228827 RIMBP3CA6NJZ7 1639 aa24.98■■□□□ 1.59
GPN3-201ENST00000228827 RIMBP3BA6NNM3 1639 aa24.98■■□□□ 1.59
GPN3-201ENST00000228827 RIMBP3Q9UFD9 1639 aa24.98■■□□□ 1.59
GPN3-201ENST00000228827 BIVM-ERCC5R4GMW8 1640 aa24.97■■□□□ 1.59
GPN3-201ENST00000228827 ARHGEF11O15085 1522 aa24.95■■□□□ 1.59
GPN3-201ENST00000228827 ABCA5Q8WWZ7 1642 aa24.93■■□□□ 1.58
GPN3-201ENST00000228827 PBRM1Q86U86 1689 aa24.92■■□□□ 1.58
GPN3-201ENST00000228827 SYNJ2O15056 1496 aa24.91■■□□□ 1.58
GPN3-201ENST00000228827 CYB5RLQ6IPT4 315 aa24.82■■□□□ 1.56
GPN3-201ENST00000228827 CLASP1Q7Z460 1538 aa24.81■■□□□ 1.56
GPN3-201ENST00000228827 ARAP1Q96P48 1450 aa24.75■■□□□ 1.55
GPN3-201ENST00000228827 ADAMTS12P58397 1594 aa24.74■■□□□ 1.55
GPN3-201ENST00000228827 GRIN2AQ12879 1464 aa24.72■■□□□ 1.55
GPN3-201ENST00000228827 FHAD1B1AJZ9 1412 aa24.71■■□□□ 1.55
GPN3-201ENST00000228827 ERICH3Q5RHP9 1530 aa24.7■■□□□ 1.54
GPN3-201ENST00000228827 NUP160Q12769 1436 aa24.62■■□□□ 1.53
GPN3-201ENST00000228827 CEP170Q5SW79 1584 aa24.61■■□□□ 1.53
GPN3-201ENST00000228827 KIF27Q86VH2 1401 aa24.56■■□□□ 1.52
GPN3-201ENST00000228827 IGF1RP08069 1367 aa24.52■■□□□ 1.52
GPN3-201ENST00000228827 ERCC6L2Q5T890 1561 aa24.5■■□□□ 1.51
GPN3-201ENST00000228827 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.51
GPN3-201ENST00000228827 SHROOM2Q13796 1616 aa24.42■■□□□ 1.5
GPN3-201ENST00000228827 JPH4Q96JJ6 628 aa24.41■■□□□ 1.5
GPN3-201ENST00000228827 PRG4Q92954 1404 aaPredicted RBP24.39■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms