RNA–Protein interactions for RNA: ENST00000519254.2

CLN8-204, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN8, Length 1,769 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-204ENST00000519254 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
CLN8-204ENST00000519254 CCDC180Q9P1Z9 1646 aa29.21■■■□□ 2.27
CLN8-204ENST00000519254 ABCC9O60706 1549 aa28■■■□□ 2.07
CLN8-204ENST00000519254 ZCCHC6Q5VYS8 1495 aaKnown RBP27.89■■■□□ 2.05
CLN8-204ENST00000519254 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
CLN8-204ENST00000519254 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
CLN8-204ENST00000519254 NACADO15069 1562 aa27.28■■□□□ 1.96
CLN8-204ENST00000519254 MYO15BQ96JP2 1530 aa27.28■■□□□ 1.96
CLN8-204ENST00000519254 RB1CC1Q8TDY2 1594 aa27.16■■□□□ 1.94
CLN8-204ENST00000519254 SHROOM4Q9ULL8 1493 aa26.98■■□□□ 1.91
CLN8-204ENST00000519254 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
CLN8-204ENST00000519254 UNC13AQ9UPW8 1703 aa26.61■■□□□ 1.85
CLN8-204ENST00000519254 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
CLN8-204ENST00000519254 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
CLN8-204ENST00000519254 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
CLN8-204ENST00000519254 SUPT5HO00267 1087 aaKnown RBP25.76■■□□□ 1.71
CLN8-204ENST00000519254 BAZ1AQ9NRL2 1556 aaPredicted RBP25.74■■□□□ 1.71
CLN8-204ENST00000519254 MROH2BQ7Z745 1585 aa25.72■■□□□ 1.71
CLN8-204ENST00000519254 SMARCA4P51532 1647 aa25.69■■□□□ 1.7
CLN8-204ENST00000519254 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
CLN8-204ENST00000519254 EIF4G1Q04637 1599 aaKnown RBP25.59■■□□□ 1.69
CLN8-204ENST00000519254 WIZO95785 1651 aa25.51■■□□□ 1.67
CLN8-204ENST00000519254 PEG3Q9GZU2 1588 aa25.34■■□□□ 1.65
CLN8-204ENST00000519254 ATAD2BQ9ULI0 1458 aa25.34■■□□□ 1.65
CLN8-204ENST00000519254 SMARCA2P51531 1590 aa25.32■■□□□ 1.64
CLN8-204ENST00000519254 CC2D2AQ9P2K1 1620 aa25.31■■□□□ 1.64
CLN8-204ENST00000519254 TOP2AP11388 1531 aaKnown RBP25.22■■□□□ 1.63
CLN8-204ENST00000519254 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
CLN8-204ENST00000519254 NCAPD3P42695 1498 aa25.16■■□□□ 1.62
CLN8-204ENST00000519254 HMGXB3Q12766 1538 aa25.12■■□□□ 1.61
CLN8-204ENST00000519254 DNAJC5BQ9UF47 199 aa24.99■■□□□ 1.59
CLN8-204ENST00000519254 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
CLN8-204ENST00000519254 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
CLN8-204ENST00000519254 CFTRP13569 1480 aa24.51■■□□□ 1.51
CLN8-204ENST00000519254 CADPSQ9ULU8 1353 aa24.51■■□□□ 1.51
CLN8-204ENST00000519254 NESP48681 1621 aa24.46■■□□□ 1.51
CLN8-204ENST00000519254 PRDM2Q13029 1718 aa24.4■■□□□ 1.5
CLN8-204ENST00000519254 LAMC3Q9Y6N6 1575 aa24.39■■□□□ 1.5
CLN8-204ENST00000519254 ABCC8Q09428 1581 aa24.35■■□□□ 1.49
CLN8-204ENST00000519254 FANCD2Q9BXW9 1451 aa24.27■■□□□ 1.48
CLN8-204ENST00000519254 PDS5BQ9NTI5 1447 aa24.22■■□□□ 1.47
CLN8-204ENST00000519254 TRIM41Q8WV44 630 aa24.21■■□□□ 1.47
CLN8-204ENST00000519254 WRNQ14191 1432 aaPredicted RBP eCLIP24.2■■□□□ 1.47
CLN8-204ENST00000519254 KIF21AQ7Z4S6 1674 aa24.17■■□□□ 1.46
CLN8-204ENST00000519254 CEP164Q9UPV0 1460 aa24.16■■□□□ 1.46
CLN8-204ENST00000519254 SYNJ1O43426 1573 aa24.13■■□□□ 1.45
CLN8-204ENST00000519254 CUX1P39880 1505 aa24.08■■□□□ 1.44
CLN8-204ENST00000519254 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
CLN8-204ENST00000519254 TOP2BQ02880 1626 aa24.04■■□□□ 1.44
CLN8-204ENST00000519254 BIVM-ERCC5R4GMW8 1640 aa24.02■■□□□ 1.44
CLN8-204ENST00000519254 URB2Q14146 1524 aaKnown RBP23.98■■□□□ 1.43
CLN8-204ENST00000519254 DNMBPQ6XZF7 1577 aa23.97■■□□□ 1.43
CLN8-204ENST00000519254 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
CLN8-204ENST00000519254 MRC2Q9UBG0 1479 aa23.95■■□□□ 1.42
CLN8-204ENST00000519254 FGD5Q6ZNL6 1462 aa23.89■■□□□ 1.41
CLN8-204ENST00000519254 THOC2Q8NI27 1593 aaKnown RBP23.85■■□□□ 1.41
CLN8-204ENST00000519254 WDR62O43379 1518 aa23.82■■□□□ 1.4
CLN8-204ENST00000519254 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
CLN8-204ENST00000519254 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
CLN8-204ENST00000519254 SOGA1O94964 1423 aa23.79■■□□□ 1.4
CLN8-204ENST00000519254 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
CLN8-204ENST00000519254 RUSC2Q8N2Y8 1516 aa23.72■■□□□ 1.39
CLN8-204ENST00000519254 LOC105371045A0A1W2PR82 267 aa23.71■■□□□ 1.39
CLN8-204ENST00000519254 CUX2O14529 1486 aa23.67■■□□□ 1.38
CLN8-204ENST00000519254 ABCA10Q8WWZ4 1543 aa23.63■■□□□ 1.37
CLN8-204ENST00000519254 EEA1Q15075 1411 aa23.63■■□□□ 1.37
CLN8-204ENST00000519254 KIF27Q86VH2 1401 aa23.62■■□□□ 1.37
CLN8-204ENST00000519254 TARBP1Q13395 1621 aaKnown RBP23.61■■□□□ 1.37
CLN8-204ENST00000519254 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
CLN8-204ENST00000519254 IFT140Q96RY7 1462 aa23.58■■□□□ 1.37
CLN8-204ENST00000519254 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
CLN8-204ENST00000519254 CSRNP3Q8WYN3 585 aa23.55■■□□□ 1.36
CLN8-204ENST00000519254 EHMT2Q96KQ7 1210 aa23.54■■□□□ 1.36
CLN8-204ENST00000519254 ABCA5Q8WWZ7 1642 aa23.49■■□□□ 1.35
CLN8-204ENST00000519254 ZNF608Q9ULD9 1512 aaPredicted RBP23.49■■□□□ 1.35
CLN8-204ENST00000519254 GAPVD1Q14C86 1478 aa23.46■■□□□ 1.35
CLN8-204ENST00000519254 AQRO60306 1485 aaKnown RBP eCLIP23.46■■□□□ 1.35
CLN8-204ENST00000519254 IGF1RP08069 1367 aa23.42■■□□□ 1.34
CLN8-204ENST00000519254 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
CLN8-204ENST00000519254 PBRM1Q86U86 1689 aa23.39■■□□□ 1.33
CLN8-204ENST00000519254 KIF21BO75037 1637 aa23.37■■□□□ 1.33
CLN8-204ENST00000519254 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
CLN8-204ENST00000519254 PRXQ9BXM0 1461 aa23.34■■□□□ 1.33
CLN8-204ENST00000519254 GRIN2BQ13224 1484 aa23.33■■□□□ 1.33
CLN8-204ENST00000519254 GOLGA3Q08378 1498 aa23.32■■□□□ 1.32
CLN8-204ENST00000519254 RAPGEF2Q9Y4G8 1499 aa23.32■■□□□ 1.32
CLN8-204ENST00000519254 CARMIL1Q5VZK9 1371 aa23.32■■□□□ 1.32
CLN8-204ENST00000519254 CUL7Q14999 1698 aa23.31■■□□□ 1.32
CLN8-204ENST00000519254 UBTFP17480 764 aaKnown RBP23.27■■□□□ 1.32
CLN8-204ENST00000519254 SNAPC4Q5SXM2 1469 aa23.25■■□□□ 1.31
CLN8-204ENST00000519254 ADAMTS12P58397 1594 aa23.23■■□□□ 1.31
CLN8-204ENST00000519254 FHAD1B1AJZ9 1412 aa23.19■■□□□ 1.3
CLN8-204ENST00000519254 MAGI1Q96QZ7 1491 aaPredicted RBP23.17■■□□□ 1.3
CLN8-204ENST00000519254 TNIKQ9UKE5 1360 aa23.14■■□□□ 1.29
CLN8-204ENST00000519254 FBLN2P98095 1184 aa23.1■■□□□ 1.29
CLN8-204ENST00000519254 SYNJ2O15056 1496 aa23.09■■□□□ 1.29
CLN8-204ENST00000519254 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.29
CLN8-204ENST00000519254 RANGAP1P46060 587 aaPredicted RBP23.06■■□□□ 1.28
CLN8-204ENST00000519254 GRIN2AQ12879 1464 aa23.05■■□□□ 1.28
CLN8-204ENST00000519254 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms