Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 FO393414.2-201ENST00000405153 598 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 AC096734.2-201ENST00000562054 433 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.92□□□□□ -0.02
SHOX2O60902 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 AC092364.2-202ENST00000597012 1073 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SHOX2O60902 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 PCDHB19P-202ENST00000625133 2914 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 AC025580.3-201ENST00000617932 1424 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 TUBB8P4-201ENST00000511806 1324 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 AC004870.1-201ENST00000315132 882 ntBASIC14.91□□□□□ -0.02
SHOX2O60902 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.91□□□□□ -0.02
SHOX2O60902 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.91□□□□□ -0.02
SHOX2O60902 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.91□□□□□ -0.02
SHOX2O60902 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 AC104692.2-201ENST00000603054 253 ntBASIC14.91□□□□□ -0.02
SHOX2O60902 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.91□□□□□ -0.02
SHOX2O60902 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.91□□□□□ -0.02
SHOX2O60902 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 AL137783.1-201ENST00000623494 1896 ntBASIC14.91□□□□□ -0.02
SHOX2O60902 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SHOX2O60902 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC14.91□□□□□ -0.02
SHOX2O60902 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SHOX2O60902 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms