RNA–Protein interactions for RNA: ENST00000396581.5

TRIM40-207, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM40, Length 2,086 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-207ENST00000396581 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
TRIM40-207ENST00000396581 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
TRIM40-207ENST00000396581 ZCCHC6Q5VYS8 1495 aaKnown RBP23.64■■□□□ 1.38
TRIM40-207ENST00000396581 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
TRIM40-207ENST00000396581 DCAF8L2P0C7V8 631 aa23.21■■□□□ 1.31
TRIM40-207ENST00000396581 ABCC9O60706 1549 aa23.04■■□□□ 1.28
TRIM40-207ENST00000396581 SHROOM4Q9ULL8 1493 aa22.98■■□□□ 1.27
TRIM40-207ENST00000396581 MYO15BQ96JP2 1530 aa22.98■■□□□ 1.27
TRIM40-207ENST00000396581 NACADO15069 1562 aa22.77■■□□□ 1.24
TRIM40-207ENST00000396581 SUPT5HO00267 1087 aaKnown RBP22.61■■□□□ 1.21
TRIM40-207ENST00000396581 RB1CC1Q8TDY2 1594 aa22.53■■□□□ 1.2
TRIM40-207ENST00000396581 SCRIBQ14160 1630 aa22.46■■□□□ 1.19
TRIM40-207ENST00000396581 CHIC1Q5VXU3 224 aa22.3■■□□□ 1.16
TRIM40-207ENST00000396581 HRCP23327 699 aa22.19■■□□□ 1.14
TRIM40-207ENST00000396581 UNC13AQ9UPW8 1703 aa22.03■■□□□ 1.12
TRIM40-207ENST00000396581 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
TRIM40-207ENST00000396581 BICRAQ9NZM4 1560 aa21.87■■□□□ 1.09
TRIM40-207ENST00000396581 CECR2Q9BXF3 1484 aa21.86■■□□□ 1.09
TRIM40-207ENST00000396581 PCGF6Q9BYE7 350 aa21.81■■□□□ 1.08
TRIM40-207ENST00000396581 PABPN1Q86U42 306 aaKnown RBP eCLIP21.78■■□□□ 1.08
TRIM40-207ENST00000396581 MROH2BQ7Z745 1585 aa21.73■■□□□ 1.07
TRIM40-207ENST00000396581 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
TRIM40-207ENST00000396581 SMARCA4P51532 1647 aa21.56■■□□□ 1.04
TRIM40-207ENST00000396581 LOC105371045A0A1W2PR82 267 aa21.54■■□□□ 1.04
TRIM40-207ENST00000396581 WIZO95785 1651 aa21.52■■□□□ 1.04
TRIM40-207ENST00000396581 PPARGC1BQ86YN6 1023 aaKnown RBP21.51■■□□□ 1.03
TRIM40-207ENST00000396581 TRIM26Q12899 539 aaPredicted RBP21.46■■□□□ 1.03
TRIM40-207ENST00000396581 PEG3Q9GZU2 1588 aa21.34■■□□□ 1.01
TRIM40-207ENST00000396581 TOP2AP11388 1531 aaKnown RBP21.31■■□□□ 1
TRIM40-207ENST00000396581 ATAD2BQ9ULI0 1458 aa21.24■□□□□ 0.99
TRIM40-207ENST00000396581 SMARCA2P51531 1590 aa21.2■□□□□ 0.98
TRIM40-207ENST00000396581 EIF4G1Q04637 1599 aaKnown RBP21.2■□□□□ 0.98
TRIM40-207ENST00000396581 ZEB1P37275 1124 aaPredicted RBP21.18■□□□□ 0.98
TRIM40-207ENST00000396581 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
TRIM40-207ENST00000396581 TRIM41Q8WV44 630 aa21.11■□□□□ 0.97
TRIM40-207ENST00000396581 BAZ1BQ9UIG0 1483 aaKnown RBP21.09■□□□□ 0.97
TRIM40-207ENST00000396581 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
TRIM40-207ENST00000396581 HMGXB3Q12766 1538 aa20.99■□□□□ 0.95
TRIM40-207ENST00000396581 CC2D2AQ9P2K1 1620 aa20.85■□□□□ 0.93
TRIM40-207ENST00000396581 FAM9AQ8IZU1 332 aaPredicted RBP20.82■□□□□ 0.92
TRIM40-207ENST00000396581 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
TRIM40-207ENST00000396581 PELP1Q8IZL8 1130 aaKnown RBP20.67■□□□□ 0.9
TRIM40-207ENST00000396581 CFTRP13569 1480 aa20.61■□□□□ 0.89
TRIM40-207ENST00000396581 SCAF1Q9H7N4 1312 aaKnown RBP20.59■□□□□ 0.89
TRIM40-207ENST00000396581 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
TRIM40-207ENST00000396581 CADPSQ9ULU8 1353 aa20.53■□□□□ 0.88
TRIM40-207ENST00000396581 EHMT2Q96KQ7 1210 aa20.52■□□□□ 0.87
TRIM40-207ENST00000396581 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
TRIM40-207ENST00000396581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.4■□□□□ 0.86
TRIM40-207ENST00000396581 CCER1Q8TC90 406 aaPredicted RBP20.39■□□□□ 0.85
TRIM40-207ENST00000396581 PRDM2Q13029 1718 aa20.39■□□□□ 0.85
TRIM40-207ENST00000396581 TOP2BQ02880 1626 aa20.37■□□□□ 0.85
TRIM40-207ENST00000396581 DNAJC5BQ9UF47 199 aa20.37■□□□□ 0.85
TRIM40-207ENST00000396581 TNIKQ9UKE5 1360 aa20.37■□□□□ 0.85
TRIM40-207ENST00000396581 SOGA1O94964 1423 aa20.36■□□□□ 0.85
TRIM40-207ENST00000396581 EEA1Q15075 1411 aa20.36■□□□□ 0.85
TRIM40-207ENST00000396581 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
TRIM40-207ENST00000396581 ACIN1Q9UKV3 1341 aaKnown RBP20.32■□□□□ 0.84
TRIM40-207ENST00000396581 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
TRIM40-207ENST00000396581 CUX1P39880 1505 aa20.3■□□□□ 0.84
TRIM40-207ENST00000396581 LAMC3Q9Y6N6 1575 aa20.27■□□□□ 0.84
TRIM40-207ENST00000396581 NESP48681 1621 aa20.27■□□□□ 0.84
TRIM40-207ENST00000396581 FANCD2Q9BXW9 1451 aa20.26■□□□□ 0.83
TRIM40-207ENST00000396581 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
TRIM40-207ENST00000396581 CSRNP3Q8WYN3 585 aa20.25■□□□□ 0.83
TRIM40-207ENST00000396581 DIEXFQ68CQ4 756 aaKnown RBP20.22■□□□□ 0.83
TRIM40-207ENST00000396581 NEUROD1Q13562 356 aa20.22■□□□□ 0.83
TRIM40-207ENST00000396581 GOLGA3Q08378 1498 aa20.16■□□□□ 0.82
TRIM40-207ENST00000396581 PDS5BQ9NTI5 1447 aa20.15■□□□□ 0.82
TRIM40-207ENST00000396581 CENPBP07199 599 aaPredicted RBP20.12■□□□□ 0.81
TRIM40-207ENST00000396581 CEP164Q9UPV0 1460 aa20.1■□□□□ 0.81
TRIM40-207ENST00000396581 DNMBPQ6XZF7 1577 aa20.07■□□□□ 0.8
TRIM40-207ENST00000396581 FGD5Q6ZNL6 1462 aa20.06■□□□□ 0.8
TRIM40-207ENST00000396581 KIF21BO75037 1637 aa20.06■□□□□ 0.8
TRIM40-207ENST00000396581 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
TRIM40-207ENST00000396581 TOPBP1Q92547 1522 aa20.05■□□□□ 0.8
TRIM40-207ENST00000396581 ZNF316A6NFI3 1004 aaPredicted RBP20.03■□□□□ 0.8
TRIM40-207ENST00000396581 GTF3C3Q9Y5Q9 886 aa20.03■□□□□ 0.8
TRIM40-207ENST00000396581 UBTFP17480 764 aaKnown RBP20.02■□□□□ 0.8
TRIM40-207ENST00000396581 URB2Q14146 1524 aaKnown RBP20■□□□□ 0.79
TRIM40-207ENST00000396581 TTBK1Q5TCY1 1321 aaPredicted RBP19.97■□□□□ 0.79
TRIM40-207ENST00000396581 POLA1P09884 1462 aaPredicted RBP19.97■□□□□ 0.79
TRIM40-207ENST00000396581 KIF21AQ7Z4S6 1674 aa19.96■□□□□ 0.79
TRIM40-207ENST00000396581 PRXQ9BXM0 1461 aa19.96■□□□□ 0.79
TRIM40-207ENST00000396581 CUX2O14529 1486 aa19.96■□□□□ 0.79
TRIM40-207ENST00000396581 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
TRIM40-207ENST00000396581 ABCA10Q8WWZ4 1543 aa19.92■□□□□ 0.78
TRIM40-207ENST00000396581 VPS8Q8N3P4 1428 aa19.91■□□□□ 0.78
TRIM40-207ENST00000396581 IGF1RP08069 1367 aa19.9■□□□□ 0.78
TRIM40-207ENST00000396581 ERICH3Q5RHP9 1530 aa19.9■□□□□ 0.78
TRIM40-207ENST00000396581 RAD54L2Q9Y4B4 1467 aa19.9■□□□□ 0.78
TRIM40-207ENST00000396581 CLIP1P30622 1438 aa19.9■□□□□ 0.78
TRIM40-207ENST00000396581 MRC2Q9UBG0 1479 aa19.85■□□□□ 0.77
TRIM40-207ENST00000396581 CARMIL1Q5VZK9 1371 aa19.78■□□□□ 0.76
TRIM40-207ENST00000396581 WDR97A6NE52 1622 aa19.77■□□□□ 0.75
TRIM40-207ENST00000396581 MYT1Q01538 1121 aa19.75■□□□□ 0.75
TRIM40-207ENST00000396581 WDR62O43379 1518 aa19.75■□□□□ 0.75
TRIM40-207ENST00000396581 HNRNPUL2Q1KMD3 747 aaKnown RBP19.74■□□□□ 0.75
TRIM40-207ENST00000396581 TARBP1Q13395 1621 aaKnown RBP19.73■□□□□ 0.75
TRIM40-207ENST00000396581 ERCC6Q03468 1493 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms