RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NISCHQ9Y2I1 1504 aa37.29■■■■□ 3.56
USP40-206ENST00000443711 CCDC180Q9P1Z9 1646 aa32.93■■■□□ 2.86
USP40-206ENST00000443711 ABCC9O60706 1549 aa31.72■■■□□ 2.67
USP40-206ENST00000443711 ZCCHC6Q5VYS8 1495 aaKnown RBP31.14■■■□□ 2.58
USP40-206ENST00000443711 DCAF8L2P0C7V8 631 aa31■■■□□ 2.55
USP40-206ENST00000443711 DCAF1Q9Y4B6 1507 aa30.88■■■□□ 2.53
USP40-206ENST00000443711 NACADO15069 1562 aa30.84■■■□□ 2.53
USP40-206ENST00000443711 MYO15BQ96JP2 1530 aa30.82■■■□□ 2.52
USP40-206ENST00000443711 RB1CC1Q8TDY2 1594 aa30.76■■■□□ 2.52
USP40-206ENST00000443711 SCRIBQ14160 1630 aa30.07■■■□□ 2.4
USP40-206ENST00000443711 UNC13AQ9UPW8 1703 aa30.07■■■□□ 2.4
USP40-206ENST00000443711 SHROOM4Q9ULL8 1493 aa29.78■■■□□ 2.36
USP40-206ENST00000443711 BICRAQ9NZM4 1560 aa29.77■■■□□ 2.36
USP40-206ENST00000443711 PABPN1Q86U42 306 aaKnown RBP eCLIP29.74■■■□□ 2.35
USP40-206ENST00000443711 CECR2Q9BXF3 1484 aa28.97■■■□□ 2.23
USP40-206ENST00000443711 EIF4G1Q04637 1599 aaKnown RBP28.95■■■□□ 2.22
USP40-206ENST00000443711 BAZ1AQ9NRL2 1556 aaPredicted RBP28.88■■■□□ 2.21
USP40-206ENST00000443711 SMARCA4P51532 1647 aa28.82■■■□□ 2.2
USP40-206ENST00000443711 MROH2BQ7Z745 1585 aa28.74■■■□□ 2.19
USP40-206ENST00000443711 CC2D2AQ9P2K1 1620 aa28.72■■■□□ 2.19
USP40-206ENST00000443711 DNAJC5BQ9UF47 199 aa28.64■■■□□ 2.18
USP40-206ENST00000443711 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
USP40-206ENST00000443711 SMARCA2P51531 1590 aa28.54■■■□□ 2.16
USP40-206ENST00000443711 ATAD2BQ9ULI0 1458 aa28.53■■■□□ 2.16
USP40-206ENST00000443711 PEG3Q9GZU2 1588 aa28.52■■■□□ 2.16
USP40-206ENST00000443711 WIZO95785 1651 aa28.47■■■□□ 2.15
USP40-206ENST00000443711 NCAPD3P42695 1498 aa28.45■■■□□ 2.14
USP40-206ENST00000443711 HMGXB3Q12766 1538 aa28.34■■■□□ 2.13
USP40-206ENST00000443711 BAZ1BQ9UIG0 1483 aaKnown RBP28.34■■■□□ 2.13
USP40-206ENST00000443711 SUPT5HO00267 1087 aaKnown RBP28.32■■■□□ 2.12
USP40-206ENST00000443711 TOP2AP11388 1531 aaKnown RBP28.19■■■□□ 2.1
USP40-206ENST00000443711 CCDC88BA6NC98 1476 aa27.87■■■□□ 2.05
USP40-206ENST00000443711 CADPSQ9ULU8 1353 aa27.65■■■□□ 2.02
USP40-206ENST00000443711 LAMC3Q9Y6N6 1575 aa27.62■■■□□ 2.01
USP40-206ENST00000443711 NESP48681 1621 aa27.59■■■□□ 2.01
USP40-206ENST00000443711 CFTRP13569 1480 aa27.58■■■□□ 2.01
USP40-206ENST00000443711 PRDM2Q13029 1718 aa27.45■■□□□ 1.99
USP40-206ENST00000443711 PDS5BQ9NTI5 1447 aa27.43■■□□□ 1.98
USP40-206ENST00000443711 FANCD2Q9BXW9 1451 aa27.33■■□□□ 1.97
USP40-206ENST00000443711 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
USP40-206ENST00000443711 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
USP40-206ENST00000443711 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
USP40-206ENST00000443711 MRC2Q9UBG0 1479 aa27.1■■□□□ 1.93
USP40-206ENST00000443711 THOC2Q8NI27 1593 aaKnown RBP27.05■■□□□ 1.92
USP40-206ENST00000443711 ABCC8Q09428 1581 aa27.01■■□□□ 1.92
USP40-206ENST00000443711 URB2Q14146 1524 aaKnown RBP27.01■■□□□ 1.91
USP40-206ENST00000443711 WDR62O43379 1518 aa26.97■■□□□ 1.91
USP40-206ENST00000443711 WRNQ14191 1432 aaPredicted RBP eCLIP26.97■■□□□ 1.91
USP40-206ENST00000443711 DNMBPQ6XZF7 1577 aa26.97■■□□□ 1.91
USP40-206ENST00000443711 TOPBP1Q92547 1522 aa26.95■■□□□ 1.9
USP40-206ENST00000443711 CUX1P39880 1505 aa26.93■■□□□ 1.9
USP40-206ENST00000443711 SYNJ1O43426 1573 aa26.85■■□□□ 1.89
USP40-206ENST00000443711 TOP2BQ02880 1626 aa26.85■■□□□ 1.89
USP40-206ENST00000443711 BIVM-ERCC5R4GMW8 1640 aa26.84■■□□□ 1.89
USP40-206ENST00000443711 CUX2O14529 1486 aa26.82■■□□□ 1.88
USP40-206ENST00000443711 FGD5Q6ZNL6 1462 aa26.76■■□□□ 1.87
USP40-206ENST00000443711 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
USP40-206ENST00000443711 CHIC1Q5VXU3 224 aa26.73■■□□□ 1.87
USP40-206ENST00000443711 TRIM41Q8WV44 630 aa26.73■■□□□ 1.87
USP40-206ENST00000443711 SOGA1O94964 1423 aa26.68■■□□□ 1.86
USP40-206ENST00000443711 IFT140Q96RY7 1462 aa26.67■■□□□ 1.86
USP40-206ENST00000443711 RAD54L2Q9Y4B4 1467 aa26.63■■□□□ 1.85
USP40-206ENST00000443711 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
USP40-206ENST00000443711 ABCA10Q8WWZ4 1543 aa26.54■■□□□ 1.84
USP40-206ENST00000443711 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
USP40-206ENST00000443711 ZNF608Q9ULD9 1512 aaPredicted RBP26.47■■□□□ 1.83
USP40-206ENST00000443711 TDRD9Q8NDG6 1382 aaKnown RBP26.46■■□□□ 1.83
USP40-206ENST00000443711 AQRO60306 1485 aaKnown RBP eCLIP26.41■■□□□ 1.82
USP40-206ENST00000443711 EIF4G3O43432 1585 aaKnown RBP26.39■■□□□ 1.82
USP40-206ENST00000443711 KIF27Q86VH2 1401 aa26.38■■□□□ 1.81
USP40-206ENST00000443711 GAPVD1Q14C86 1478 aa26.36■■□□□ 1.81
USP40-206ENST00000443711 ABCA5Q8WWZ7 1642 aa26.36■■□□□ 1.81
USP40-206ENST00000443711 GRIN2BQ13224 1484 aa26.3■■□□□ 1.8
USP40-206ENST00000443711 PBRM1Q86U86 1689 aa26.28■■□□□ 1.8
USP40-206ENST00000443711 RUSC2Q8N2Y8 1516 aa26.27■■□□□ 1.8
USP40-206ENST00000443711 EEA1Q15075 1411 aa26.23■■□□□ 1.79
USP40-206ENST00000443711 ERICH3Q5RHP9 1530 aa26.23■■□□□ 1.79
USP40-206ENST00000443711 IGF1RP08069 1367 aa26.2■■□□□ 1.78
USP40-206ENST00000443711 SNAPC4Q5SXM2 1469 aa26.17■■□□□ 1.78
USP40-206ENST00000443711 MAGI1Q96QZ7 1491 aaPredicted RBP26.17■■□□□ 1.78
USP40-206ENST00000443711 FAM9AQ8IZU1 332 aaPredicted RBP26.16■■□□□ 1.78
USP40-206ENST00000443711 CSRNP3Q8WYN3 585 aa26.14■■□□□ 1.78
USP40-206ENST00000443711 CUL7Q14999 1698 aa26.1■■□□□ 1.77
USP40-206ENST00000443711 FHAD1B1AJZ9 1412 aa26.09■■□□□ 1.77
USP40-206ENST00000443711 ADAMTS12P58397 1594 aa26.07■■□□□ 1.76
USP40-206ENST00000443711 CARMIL1Q5VZK9 1371 aa26.07■■□□□ 1.76
USP40-206ENST00000443711 SYNJ2O15056 1496 aa26.05■■□□□ 1.76
USP40-206ENST00000443711 CHMP7Q8WUX9 453 aaPredicted RBP26.04■■□□□ 1.76
USP40-206ENST00000443711 FBLN2P98095 1184 aa26.03■■□□□ 1.76
USP40-206ENST00000443711 CHD1O14646 1710 aa25.99■■□□□ 1.75
USP40-206ENST00000443711 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
USP40-206ENST00000443711 RAPGEF2Q9Y4G8 1499 aa25.97■■□□□ 1.75
USP40-206ENST00000443711 GRIN2AQ12879 1464 aa25.94■■□□□ 1.74
USP40-206ENST00000443711 KIF21BO75037 1637 aa25.89■■□□□ 1.74
USP40-206ENST00000443711 OSCARQ8IYS5 282 aa25.86■■□□□ 1.73
USP40-206ENST00000443711 DNAJC5Q9H3Z4 198 aa25.86■■□□□ 1.73
USP40-206ENST00000443711 NUP160Q12769 1436 aa25.8■■□□□ 1.72
USP40-206ENST00000443711 GOLGA3Q08378 1498 aa25.79■■□□□ 1.72
USP40-206ENST00000443711 CEP170Q5SW79 1584 aa25.78■■□□□ 1.72
USP40-206ENST00000443711 EHMT2Q96KQ7 1210 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms