RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NISCHQ9Y2I1 1504 aa30.25■■■□□ 2.43
SNCA-204ENST00000394989 CCDC180Q9P1Z9 1646 aa26■■□□□ 1.75
SNCA-204ENST00000394989 ZCCHC6Q5VYS8 1495 aaKnown RBP25.54■■□□□ 1.68
SNCA-204ENST00000394989 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
SNCA-204ENST00000394989 DCAF8L2P0C7V8 631 aa24.92■■□□□ 1.58
SNCA-204ENST00000394989 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
SNCA-204ENST00000394989 SUPT5HO00267 1087 aaKnown RBP24.58■■□□□ 1.52
SNCA-204ENST00000394989 MYO15BQ96JP2 1530 aa24.36■■□□□ 1.49
SNCA-204ENST00000394989 ABCC9O60706 1549 aa24.25■■□□□ 1.47
SNCA-204ENST00000394989 SCRIBQ14160 1630 aa24.17■■□□□ 1.46
SNCA-204ENST00000394989 NACADO15069 1562 aa24.08■■□□□ 1.45
SNCA-204ENST00000394989 CHIC1Q5VXU3 224 aa23.79■■□□□ 1.4
SNCA-204ENST00000394989 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
SNCA-204ENST00000394989 RSF1Q96T23 1441 aaPredicted RBP23.75■■□□□ 1.39
SNCA-204ENST00000394989 CECR2Q9BXF3 1484 aa23.58■■□□□ 1.36
SNCA-204ENST00000394989 MROH2BQ7Z745 1585 aa23.48■■□□□ 1.35
SNCA-204ENST00000394989 UNC13AQ9UPW8 1703 aa23.45■■□□□ 1.35
SNCA-204ENST00000394989 WIZO95785 1651 aa23.33■■□□□ 1.33
SNCA-204ENST00000394989 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
SNCA-204ENST00000394989 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
SNCA-204ENST00000394989 SMARCA4P51532 1647 aa23.14■■□□□ 1.3
SNCA-204ENST00000394989 PABPN1Q86U42 306 aaKnown RBP eCLIP23.04■■□□□ 1.28
SNCA-204ENST00000394989 LOC105371045A0A1W2PR82 267 aa23.01■■□□□ 1.27
SNCA-204ENST00000394989 TOP2AP11388 1531 aaKnown RBP22.99■■□□□ 1.27
SNCA-204ENST00000394989 TRIM41Q8WV44 630 aa22.97■■□□□ 1.27
SNCA-204ENST00000394989 EIF4G1Q04637 1599 aaKnown RBP22.93■■□□□ 1.26
SNCA-204ENST00000394989 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
SNCA-204ENST00000394989 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
SNCA-204ENST00000394989 PEG3Q9GZU2 1588 aa22.78■■□□□ 1.24
SNCA-204ENST00000394989 FAM9AQ8IZU1 332 aaPredicted RBP22.69■■□□□ 1.22
SNCA-204ENST00000394989 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
SNCA-204ENST00000394989 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
SNCA-204ENST00000394989 PCGF6Q9BYE7 350 aa22.54■■□□□ 1.2
SNCA-204ENST00000394989 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
SNCA-204ENST00000394989 EHMT2Q96KQ7 1210 aa22.44■■□□□ 1.18
SNCA-204ENST00000394989 SOGA1O94964 1423 aa22.31■■□□□ 1.16
SNCA-204ENST00000394989 HRCP23327 699 aa22.31■■□□□ 1.16
SNCA-204ENST00000394989 WRNQ14191 1432 aaPredicted RBP eCLIP22.29■■□□□ 1.16
SNCA-204ENST00000394989 NCAPD3P42695 1498 aa22.27■■□□□ 1.16
SNCA-204ENST00000394989 HMGXB3Q12766 1538 aa22.27■■□□□ 1.16
SNCA-204ENST00000394989 TRIM26Q12899 539 aaPredicted RBP22.27■■□□□ 1.16
SNCA-204ENST00000394989 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
SNCA-204ENST00000394989 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
SNCA-204ENST00000394989 EEA1Q15075 1411 aa22.17■■□□□ 1.14
SNCA-204ENST00000394989 PPARGC1BQ86YN6 1023 aaKnown RBP22.11■■□□□ 1.13
SNCA-204ENST00000394989 CSRNP3Q8WYN3 585 aa22.11■■□□□ 1.13
SNCA-204ENST00000394989 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
SNCA-204ENST00000394989 TNIKQ9UKE5 1360 aa22.03■■□□□ 1.12
SNCA-204ENST00000394989 CEP162Q5TB80 1403 aa22.01■■□□□ 1.11
SNCA-204ENST00000394989 BIVM-ERCC5R4GMW8 1640 aa21.99■■□□□ 1.11
SNCA-204ENST00000394989 CFTRP13569 1480 aa21.98■■□□□ 1.11
SNCA-204ENST00000394989 GOLGA3Q08378 1498 aa21.98■■□□□ 1.11
SNCA-204ENST00000394989 KIF21BO75037 1637 aa21.93■■□□□ 1.1
SNCA-204ENST00000394989 CC2D2AQ9P2K1 1620 aa21.92■■□□□ 1.1
SNCA-204ENST00000394989 CEP164Q9UPV0 1460 aa21.9■■□□□ 1.1
SNCA-204ENST00000394989 UBTFP17480 764 aaKnown RBP21.9■■□□□ 1.1
SNCA-204ENST00000394989 CUX1P39880 1505 aa21.89■■□□□ 1.1
SNCA-204ENST00000394989 PRDM2Q13029 1718 aa21.85■■□□□ 1.09
SNCA-204ENST00000394989 RAPGEF2Q9Y4G8 1499 aa21.81■■□□□ 1.08
SNCA-204ENST00000394989 CADPSQ9ULU8 1353 aa21.77■■□□□ 1.08
SNCA-204ENST00000394989 PRXQ9BXM0 1461 aa21.69■■□□□ 1.06
SNCA-204ENST00000394989 CLIP1P30622 1438 aa21.68■■□□□ 1.06
SNCA-204ENST00000394989 ERICH3Q5RHP9 1530 aa21.66■■□□□ 1.06
SNCA-204ENST00000394989 KIF27Q86VH2 1401 aa21.63■■□□□ 1.05
SNCA-204ENST00000394989 TTBK1Q5TCY1 1321 aaPredicted RBP21.62■■□□□ 1.05
SNCA-204ENST00000394989 ZEB1P37275 1124 aaPredicted RBP21.56■■□□□ 1.04
SNCA-204ENST00000394989 VPS8Q8N3P4 1428 aa21.56■■□□□ 1.04
SNCA-204ENST00000394989 FANCD2Q9BXW9 1451 aa21.55■■□□□ 1.04
SNCA-204ENST00000394989 FGD5Q6ZNL6 1462 aa21.54■■□□□ 1.04
SNCA-204ENST00000394989 NESP48681 1621 aa21.52■■□□□ 1.04
SNCA-204ENST00000394989 CUX2O14529 1486 aa21.5■■□□□ 1.03
SNCA-204ENST00000394989 RANGAP1P46060 587 aaPredicted RBP21.5■■□□□ 1.03
SNCA-204ENST00000394989 IGF1RP08069 1367 aa21.46■■□□□ 1.03
SNCA-204ENST00000394989 ARAP1Q96P48 1450 aa21.44■■□□□ 1.02
SNCA-204ENST00000394989 DNMBPQ6XZF7 1577 aa21.43■■□□□ 1.02
SNCA-204ENST00000394989 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.43■■□□□ 1.02
SNCA-204ENST00000394989 DNAJC5BQ9UF47 199 aa21.4■■□□□ 1.02
SNCA-204ENST00000394989 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
SNCA-204ENST00000394989 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
SNCA-204ENST00000394989 POLA1P09884 1462 aaPredicted RBP21.36■■□□□ 1.01
SNCA-204ENST00000394989 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
SNCA-204ENST00000394989 CARMIL1Q5VZK9 1371 aa21.32■■□□□ 1
SNCA-204ENST00000394989 ARHGAP35Q9NRY4 1499 aa21.32■■□□□ 1
SNCA-204ENST00000394989 ABCA10Q8WWZ4 1543 aa21.32■■□□□ 1
SNCA-204ENST00000394989 CCER1Q8TC90 406 aaPredicted RBP21.32■■□□□ 1
SNCA-204ENST00000394989 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
SNCA-204ENST00000394989 APLP2Q06481 763 aa21.29■■□□□ 1
SNCA-204ENST00000394989 WDR97A6NE52 1622 aa21.22■□□□□ 0.99
SNCA-204ENST00000394989 KIF21AQ7Z4S6 1674 aa21.21■□□□□ 0.99
SNCA-204ENST00000394989 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
SNCA-204ENST00000394989 KANK4Q5T7N3 995 aaPredicted RBP21.19■□□□□ 0.98
SNCA-204ENST00000394989 HNRNPUL2Q1KMD3 747 aaKnown RBP21.15■□□□□ 0.98
SNCA-204ENST00000394989 CUL7Q14999 1698 aa21.14■□□□□ 0.98
SNCA-204ENST00000394989 ABCA5Q8WWZ7 1642 aa21.12■□□□□ 0.97
SNCA-204ENST00000394989 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
SNCA-204ENST00000394989 SCAF1Q9H7N4 1312 aaKnown RBP21.08■□□□□ 0.96
SNCA-204ENST00000394989 PELP1Q8IZL8 1130 aaKnown RBP21.07■□□□□ 0.96
SNCA-204ENST00000394989 CTTNBP2Q8WZ74 1663 aa21.04■□□□□ 0.96
SNCA-204ENST00000394989 TARBP1Q13395 1621 aaKnown RBP21.04■□□□□ 0.96
SNCA-204ENST00000394989 GAPVD1Q14C86 1478 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms