Protein–RNA interactions for Protein: Q9GZT3

SLIRP, SRA stem-loop-interacting RNA-binding protein, mitochondrial, humanhuman

Known RBP Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRPQ9GZT3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC004899.2-201ENST00000622993 3860 ntBASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC092119.3-201ENST00000612618 583 ntBASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 REXO1L6P-202ENST00000619970 1078 ntBASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SLIRPQ9GZT3 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 PCED1CP-201ENST00000419887 785 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 HIST3H2BA-201ENST00000436555 524 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC096734.2-201ENST00000562054 433 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 SAMD11P1-201ENST00000571429 661 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 MIR6074-201ENST00000612054 107 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 AC010507.1-201ENST00000633895 436 ntBASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.18□□□□□ -0.3
SLIRPQ9GZT3 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms