RNA–Protein interactions for RNA: ENST00000616325.1

PCDHA11-202, Transcript of protocadherin alpha 11, humanhuman

APPRIS ALT2 BASIC

Gene PCDHA11, Length 3,418 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-202ENST00000616325 NISCHQ9Y2I1 1504 aa25.56■■□□□ 1.68
PCDHA11-202ENST00000616325 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
PCDHA11-202ENST00000616325 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
PCDHA11-202ENST00000616325 DCAF8L2P0C7V8 631 aa22.62■■□□□ 1.21
PCDHA11-202ENST00000616325 HRCP23327 699 aa22.44■■□□□ 1.18
PCDHA11-202ENST00000616325 PPARGC1BQ86YN6 1023 aaKnown RBP22.36■■□□□ 1.17
PCDHA11-202ENST00000616325 PCGF6Q9BYE7 350 aa22.34■■□□□ 1.17
PCDHA11-202ENST00000616325 CHIC1Q5VXU3 224 aa21.95■■□□□ 1.1
PCDHA11-202ENST00000616325 MYO15BQ96JP2 1530 aa21.85■■□□□ 1.09
PCDHA11-202ENST00000616325 LOC105371045A0A1W2PR82 267 aa21.76■■□□□ 1.07
PCDHA11-202ENST00000616325 EHMT2Q96KQ7 1210 aa21.69■■□□□ 1.06
PCDHA11-202ENST00000616325 PELP1Q8IZL8 1130 aaKnown RBP21.68■■□□□ 1.06
PCDHA11-202ENST00000616325 ZCCHC6Q5VYS8 1495 aaKnown RBP21.57■■□□□ 1.04
PCDHA11-202ENST00000616325 FAM9AQ8IZU1 332 aaPredicted RBP21.43■■□□□ 1.02
PCDHA11-202ENST00000616325 SCAF1Q9H7N4 1312 aaKnown RBP21.4■■□□□ 1.02
PCDHA11-202ENST00000616325 TRIM26Q12899 539 aaPredicted RBP21.24■□□□□ 0.99
PCDHA11-202ENST00000616325 TRIM41Q8WV44 630 aa21.08■□□□□ 0.97
PCDHA11-202ENST00000616325 CCDC180Q9P1Z9 1646 aa21.05■□□□□ 0.96
PCDHA11-202ENST00000616325 ZEB1P37275 1124 aaPredicted RBP21.01■□□□□ 0.95
PCDHA11-202ENST00000616325 TTBK1Q5TCY1 1321 aaPredicted RBP20.99■□□□□ 0.95
PCDHA11-202ENST00000616325 DCAF1Q9Y4B6 1507 aa20.92■□□□□ 0.94
PCDHA11-202ENST00000616325 NEUROD1Q13562 356 aa20.86■□□□□ 0.93
PCDHA11-202ENST00000616325 GTF3C3Q9Y5Q9 886 aa20.85■□□□□ 0.93
PCDHA11-202ENST00000616325 ACIN1Q9UKV3 1341 aaKnown RBP20.81■□□□□ 0.92
PCDHA11-202ENST00000616325 MYT1Q01538 1121 aa20.78■□□□□ 0.92
PCDHA11-202ENST00000616325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.68■□□□□ 0.9
PCDHA11-202ENST00000616325 CENPBP07199 599 aaPredicted RBP20.65■□□□□ 0.9
PCDHA11-202ENST00000616325 SCRIBQ14160 1630 aa20.64■□□□□ 0.9
PCDHA11-202ENST00000616325 CCER1Q8TC90 406 aaPredicted RBP20.63■□□□□ 0.89
PCDHA11-202ENST00000616325 YTHDC1Q96MU7 727 aaKnown RBP20.62■□□□□ 0.89
PCDHA11-202ENST00000616325 RSF1Q96T23 1441 aaPredicted RBP20.57■□□□□ 0.88
PCDHA11-202ENST00000616325 DIEXFQ68CQ4 756 aaKnown RBP20.55■□□□□ 0.88
PCDHA11-202ENST00000616325 RB1CC1Q8TDY2 1594 aa20.44■□□□□ 0.86
PCDHA11-202ENST00000616325 ABCC9O60706 1549 aa20.38■□□□□ 0.85
PCDHA11-202ENST00000616325 RANGAP1P46060 587 aaPredicted RBP20.3■□□□□ 0.84
PCDHA11-202ENST00000616325 CECR2Q9BXF3 1484 aa20.3■□□□□ 0.84
PCDHA11-202ENST00000616325 UBTFP17480 764 aaKnown RBP20.23■□□□□ 0.83
PCDHA11-202ENST00000616325 MROH2BQ7Z745 1585 aa20.1■□□□□ 0.81
PCDHA11-202ENST00000616325 HNRNPUL2Q1KMD3 747 aaKnown RBP20.09■□□□□ 0.81
PCDHA11-202ENST00000616325 MIER1Q8N108 512 aa20.01■□□□□ 0.79
PCDHA11-202ENST00000616325 WIZO95785 1651 aa20■□□□□ 0.79
PCDHA11-202ENST00000616325 ZNF316A6NFI3 1004 aaPredicted RBP20■□□□□ 0.79
PCDHA11-202ENST00000616325 ABCC8Q09428 1581 aa19.93■□□□□ 0.78
PCDHA11-202ENST00000616325 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
PCDHA11-202ENST00000616325 CCDC88BA6NC98 1476 aa19.87■□□□□ 0.77
PCDHA11-202ENST00000616325 SOGA1O94964 1423 aa19.86■□□□□ 0.77
PCDHA11-202ENST00000616325 CEP162Q5TB80 1403 aa19.83■□□□□ 0.77
PCDHA11-202ENST00000616325 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
PCDHA11-202ENST00000616325 APLP2Q06481 763 aa19.8■□□□□ 0.76
PCDHA11-202ENST00000616325 BCL11AQ9H165 835 aa19.76■□□□□ 0.75
PCDHA11-202ENST00000616325 RUSC2Q8N2Y8 1516 aa19.75■□□□□ 0.75
PCDHA11-202ENST00000616325 BCANQ96GW7 911 aa19.68■□□□□ 0.74
PCDHA11-202ENST00000616325 ANP32EQ9BTT0 268 aa19.65■□□□□ 0.74
PCDHA11-202ENST00000616325 NACADO15069 1562 aa19.65■□□□□ 0.74
PCDHA11-202ENST00000616325 ITGAEP38570 1179 aa19.64■□□□□ 0.73
PCDHA11-202ENST00000616325 SUPT16HQ9Y5B9 1047 aaKnown RBP19.64■□□□□ 0.73
PCDHA11-202ENST00000616325 TSHZ2Q9NRE2 1034 aa19.57■□□□□ 0.72
PCDHA11-202ENST00000616325 TNIKQ9UKE5 1360 aa19.57■□□□□ 0.72
PCDHA11-202ENST00000616325 BAZ1AQ9NRL2 1556 aaPredicted RBP19.56■□□□□ 0.72
PCDHA11-202ENST00000616325 WRNQ14191 1432 aaPredicted RBP eCLIP19.46■□□□□ 0.71
PCDHA11-202ENST00000616325 CLIP1P30622 1438 aa19.44■□□□□ 0.7
PCDHA11-202ENST00000616325 GOLGA3Q08378 1498 aa19.43■□□□□ 0.7
PCDHA11-202ENST00000616325 TOP2AP11388 1531 aaKnown RBP19.42■□□□□ 0.7
PCDHA11-202ENST00000616325 SMARCA2P51531 1590 aa19.4■□□□□ 0.7
PCDHA11-202ENST00000616325 ATP1B4Q9UN42 357 aaPredicted RBP19.35■□□□□ 0.69
PCDHA11-202ENST00000616325 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
PCDHA11-202ENST00000616325 EIF4G1Q04637 1599 aaKnown RBP19.34■□□□□ 0.69
PCDHA11-202ENST00000616325 FKBP8Q14318 412 aa19.34■□□□□ 0.69
PCDHA11-202ENST00000616325 KCNH8Q96L42 1107 aa19.29■□□□□ 0.68
PCDHA11-202ENST00000616325 KANK4Q5T7N3 995 aaPredicted RBP19.28■□□□□ 0.68
PCDHA11-202ENST00000616325 EEA1Q15075 1411 aa19.28■□□□□ 0.68
PCDHA11-202ENST00000616325 RAPGEF2Q9Y4G8 1499 aa19.26■□□□□ 0.67
PCDHA11-202ENST00000616325 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
PCDHA11-202ENST00000616325 HIRIP3Q9BW71 556 aaPredicted RBP19.21■□□□□ 0.67
PCDHA11-202ENST00000616325 CLSPNQ9HAW4 1339 aa19.2■□□□□ 0.66
PCDHA11-202ENST00000616325 VPS8Q8N3P4 1428 aa19.2■□□□□ 0.66
PCDHA11-202ENST00000616325 NEFLP07196 543 aa19.19■□□□□ 0.66
PCDHA11-202ENST00000616325 ERICH6Q7L0X2 663 aa19.19■□□□□ 0.66
PCDHA11-202ENST00000616325 RBM19Q9Y4C8 960 aaKnown RBP19.18■□□□□ 0.66
PCDHA11-202ENST00000616325 P3H3Q8IVL6 736 aa19.15■□□□□ 0.66
PCDHA11-202ENST00000616325 SYNJ1O43426 1573 aa19.15■□□□□ 0.66
PCDHA11-202ENST00000616325 FAM50AQ14320 339 aaKnown RBP19.12■□□□□ 0.65
PCDHA11-202ENST00000616325 TRIM52Q96A61 297 aa19.09■□□□□ 0.65
PCDHA11-202ENST00000616325 DDX10Q13206 875 aaKnown RBP19.08■□□□□ 0.65
PCDHA11-202ENST00000616325 DHX57Q6P158 1386 aaKnown RBP19.07■□□□□ 0.64
PCDHA11-202ENST00000616325 BAZ1BQ9UIG0 1483 aaKnown RBP19.04■□□□□ 0.64
PCDHA11-202ENST00000616325 SIN3AQ96ST3 1273 aa19.03■□□□□ 0.64
PCDHA11-202ENST00000616325 KIF21BO75037 1637 aa19.01■□□□□ 0.63
PCDHA11-202ENST00000616325 IRX6P78412 446 aaPredicted RBP18.99■□□□□ 0.63
PCDHA11-202ENST00000616325 UNC13AQ9UPW8 1703 aa18.98■□□□□ 0.63
PCDHA11-202ENST00000616325 MSH5O43196 834 aa18.94■□□□□ 0.62
PCDHA11-202ENST00000616325 ATAD2BQ9ULI0 1458 aa18.93■□□□□ 0.62
PCDHA11-202ENST00000616325 PRKCSHP14314 528 aaPredicted RBP18.9■□□□□ 0.62
PCDHA11-202ENST00000616325 CCNB3Q8WWL7 1395 aa18.88■□□□□ 0.61
PCDHA11-202ENST00000616325 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
PCDHA11-202ENST00000616325 CNGB1Q14028 1251 aaPredicted RBP18.86■□□□□ 0.61
PCDHA11-202ENST00000616325 RAB3GAP2Q9H2M9 1393 aa18.85■□□□□ 0.61
PCDHA11-202ENST00000616325 CDK11AQ9UQ88 783 aaPredicted RBP18.83■□□□□ 0.61
PCDHA11-202ENST00000616325 BICRAQ9NZM4 1560 aa18.83■□□□□ 0.6
PCDHA11-202ENST00000616325 NBR1Q14596 966 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms