RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 NISCHQ9Y2I1 1504 aa37.9■■■■□ 3.66
HMGA1-204ENST00000401473 CCDC180Q9P1Z9 1646 aa33.43■■■□□ 2.94
HMGA1-204ENST00000401473 ABCC9O60706 1549 aa32.56■■■□□ 2.8
HMGA1-204ENST00000401473 ZCCHC6Q5VYS8 1495 aaKnown RBP31.64■■■□□ 2.66
HMGA1-204ENST00000401473 DCAF8L2P0C7V8 631 aa31.61■■■□□ 2.65
HMGA1-204ENST00000401473 NACADO15069 1562 aa31.4■■■□□ 2.62
HMGA1-204ENST00000401473 RB1CC1Q8TDY2 1594 aa31.35■■■□□ 2.61
HMGA1-204ENST00000401473 DCAF1Q9Y4B6 1507 aa31.32■■■□□ 2.6
HMGA1-204ENST00000401473 MYO15BQ96JP2 1530 aa31.31■■■□□ 2.6
HMGA1-204ENST00000401473 UNC13AQ9UPW8 1703 aa30.67■■■□□ 2.5
HMGA1-204ENST00000401473 SCRIBQ14160 1630 aa30.63■■■□□ 2.49
HMGA1-204ENST00000401473 PABPN1Q86U42 306 aaKnown RBP eCLIP30.55■■■□□ 2.48
HMGA1-204ENST00000401473 BICRAQ9NZM4 1560 aa30.48■■■□□ 2.47
HMGA1-204ENST00000401473 SHROOM4Q9ULL8 1493 aa30.32■■■□□ 2.44
HMGA1-204ENST00000401473 DNAJC5BQ9UF47 199 aa29.73■■■□□ 2.35
HMGA1-204ENST00000401473 EIF4G1Q04637 1599 aaKnown RBP29.62■■■□□ 2.33
HMGA1-204ENST00000401473 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
HMGA1-204ENST00000401473 CC2D2AQ9P2K1 1620 aa29.42■■■□□ 2.3
HMGA1-204ENST00000401473 SMARCA4P51532 1647 aa29.3■■■□□ 2.28
HMGA1-204ENST00000401473 BAZ1AQ9NRL2 1556 aaPredicted RBP29.3■■■□□ 2.28
HMGA1-204ENST00000401473 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.27
HMGA1-204ENST00000401473 ATAD2BQ9ULI0 1458 aa29.11■■■□□ 2.25
HMGA1-204ENST00000401473 RSF1Q96T23 1441 aaPredicted RBP29.1■■■□□ 2.25
HMGA1-204ENST00000401473 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
HMGA1-204ENST00000401473 SMARCA2P51531 1590 aa29.01■■■□□ 2.23
HMGA1-204ENST00000401473 PEG3Q9GZU2 1588 aa29■■■□□ 2.23
HMGA1-204ENST00000401473 WIZO95785 1651 aa28.97■■■□□ 2.23
HMGA1-204ENST00000401473 HMGXB3Q12766 1538 aa28.86■■■□□ 2.21
HMGA1-204ENST00000401473 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
HMGA1-204ENST00000401473 SUPT5HO00267 1087 aaKnown RBP28.78■■■□□ 2.2
HMGA1-204ENST00000401473 TOP2AP11388 1531 aaKnown RBP28.6■■■□□ 2.17
HMGA1-204ENST00000401473 CCDC88BA6NC98 1476 aa28.35■■■□□ 2.13
HMGA1-204ENST00000401473 NESP48681 1621 aa28.3■■■□□ 2.12
HMGA1-204ENST00000401473 CADPSQ9ULU8 1353 aa28.22■■■□□ 2.11
HMGA1-204ENST00000401473 LAMC3Q9Y6N6 1575 aa28.15■■■□□ 2.1
HMGA1-204ENST00000401473 CFTRP13569 1480 aa28.11■■■□□ 2.09
HMGA1-204ENST00000401473 PDS5BQ9NTI5 1447 aa27.98■■■□□ 2.07
HMGA1-204ENST00000401473 ERCC6Q03468 1493 aa27.98■■■□□ 2.07
HMGA1-204ENST00000401473 FANCD2Q9BXW9 1451 aa27.88■■■□□ 2.05
HMGA1-204ENST00000401473 KIF21AQ7Z4S6 1674 aa27.88■■■□□ 2.05
HMGA1-204ENST00000401473 PRDM2Q13029 1718 aa27.8■■■□□ 2.04
HMGA1-204ENST00000401473 CEP164Q9UPV0 1460 aa27.78■■■□□ 2.04
HMGA1-204ENST00000401473 THOC2Q8NI27 1593 aaKnown RBP27.71■■■□□ 2.03
HMGA1-204ENST00000401473 MRC2Q9UBG0 1479 aa27.67■■■□□ 2.02
HMGA1-204ENST00000401473 URB2Q14146 1524 aaKnown RBP27.61■■■□□ 2.01
HMGA1-204ENST00000401473 WDR62O43379 1518 aa27.57■■■□□ 2
HMGA1-204ENST00000401473 CUX2O14529 1486 aa27.54■■■□□ 2
HMGA1-204ENST00000401473 TOPBP1Q92547 1522 aa27.47■■□□□ 1.99
HMGA1-204ENST00000401473 ABCC8Q09428 1581 aa27.46■■□□□ 1.99
HMGA1-204ENST00000401473 DNMBPQ6XZF7 1577 aa27.41■■□□□ 1.98
HMGA1-204ENST00000401473 CUX1P39880 1505 aa27.4■■□□□ 1.98
HMGA1-204ENST00000401473 WRNQ14191 1432 aaPredicted RBP eCLIP27.38■■□□□ 1.973e-7■□□□□ 10.7
HMGA1-204ENST00000401473 SYNJ1O43426 1573 aa27.3■■□□□ 1.96
HMGA1-204ENST00000401473 POLA1P09884 1462 aaPredicted RBP27.27■■□□□ 1.96
HMGA1-204ENST00000401473 TOP2BQ02880 1626 aa27.25■■□□□ 1.95
HMGA1-204ENST00000401473 FGD5Q6ZNL6 1462 aa27.24■■□□□ 1.95
HMGA1-204ENST00000401473 BIVM-ERCC5R4GMW8 1640 aa27.22■■□□□ 1.95
HMGA1-204ENST00000401473 RAD54L2Q9Y4B4 1467 aa27.19■■□□□ 1.94
HMGA1-204ENST00000401473 IFT140Q96RY7 1462 aa27.18■■□□□ 1.94
HMGA1-204ENST00000401473 SOGA1O94964 1423 aa27.16■■□□□ 1.94
HMGA1-204ENST00000401473 TARBP1Q13395 1621 aaKnown RBP27.14■■□□□ 1.93
HMGA1-204ENST00000401473 CHIC1Q5VXU3 224 aa27.13■■□□□ 1.93
HMGA1-204ENST00000401473 ZNF608Q9ULD9 1512 aaPredicted RBP27.12■■□□□ 1.93
HMGA1-204ENST00000401473 TRIM41Q8WV44 630 aa27.11■■□□□ 1.93
HMGA1-204ENST00000401473 TDRD9Q8NDG6 1382 aaKnown RBP27.02■■□□□ 1.92
HMGA1-204ENST00000401473 AQRO60306 1485 aaKnown RBP eCLIP27.02■■□□□ 1.922e-7■■■■■ 51.4
HMGA1-204ENST00000401473 ABCA10Q8WWZ4 1543 aa26.98■■□□□ 1.91
HMGA1-204ENST00000401473 EIF4G3O43432 1585 aaKnown RBP26.95■■□□□ 1.9
HMGA1-204ENST00000401473 WDR97A6NE52 1622 aa26.93■■□□□ 1.9
HMGA1-204ENST00000401473 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
HMGA1-204ENST00000401473 ABCA5Q8WWZ7 1642 aa26.82■■□□□ 1.88
HMGA1-204ENST00000401473 RUSC2Q8N2Y8 1516 aa26.77■■□□□ 1.88
HMGA1-204ENST00000401473 GRIN2BQ13224 1484 aa26.77■■□□□ 1.88
HMGA1-204ENST00000401473 KIF27Q86VH2 1401 aa26.75■■□□□ 1.87
HMGA1-204ENST00000401473 SNAPC4Q5SXM2 1469 aa26.72■■□□□ 1.87
HMGA1-204ENST00000401473 PBRM1Q86U86 1689 aa26.69■■□□□ 1.86
HMGA1-204ENST00000401473 IGF1RP08069 1367 aa26.67■■□□□ 1.86
HMGA1-204ENST00000401473 MAGI1Q96QZ7 1491 aaPredicted RBP26.65■■□□□ 1.86
HMGA1-204ENST00000401473 ERICH3Q5RHP9 1530 aa26.63■■□□□ 1.85
HMGA1-204ENST00000401473 FBLN2P98095 1184 aa26.62■■□□□ 1.85
HMGA1-204ENST00000401473 FAM9AQ8IZU1 332 aaPredicted RBP26.59■■□□□ 1.85
HMGA1-204ENST00000401473 CHMP7Q8WUX9 453 aaPredicted RBP26.57■■□□□ 1.84
HMGA1-204ENST00000401473 SYNJ2O15056 1496 aa26.56■■□□□ 1.84
HMGA1-204ENST00000401473 OSCARQ8IYS5 282 aa26.53■■□□□ 1.84
HMGA1-204ENST00000401473 ADAMTS12P58397 1594 aa26.53■■□□□ 1.84
HMGA1-204ENST00000401473 CHD1O14646 1710 aa26.53■■□□□ 1.84
HMGA1-204ENST00000401473 FHAD1B1AJZ9 1412 aa26.53■■□□□ 1.84
HMGA1-204ENST00000401473 CSRNP3Q8WYN3 585 aa26.53■■□□□ 1.84
HMGA1-204ENST00000401473 EEA1Q15075 1411 aa26.5■■□□□ 1.83
HMGA1-204ENST00000401473 CARMIL1Q5VZK9 1371 aa26.49■■□□□ 1.83
HMGA1-204ENST00000401473 GRIN2AQ12879 1464 aa26.45■■□□□ 1.82
HMGA1-204ENST00000401473 DNAJC5Q9H3Z4 198 aa26.44■■□□□ 1.82
HMGA1-204ENST00000401473 CUL7Q14999 1698 aa26.43■■□□□ 1.82
HMGA1-204ENST00000401473 PRXQ9BXM0 1461 aa26.39■■□□□ 1.82
HMGA1-204ENST00000401473 RAPGEF2Q9Y4G8 1499 aa26.34■■□□□ 1.81
HMGA1-204ENST00000401473 NUP160Q12769 1436 aa26.32■■□□□ 1.8
HMGA1-204ENST00000401473 CEP170Q5SW79 1584 aa26.31■■□□□ 1.8
HMGA1-204ENST00000401473 CLASP1Q7Z460 1538 aa26.27■■□□□ 1.8
HMGA1-204ENST00000401473 EHMT2Q96KQ7 1210 aa26.25■■□□□ 1.79
HMGA1-204ENST00000401473 KIF21BO75037 1637 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms