Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGCS2P54868 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 RPL8P2-201ENST00000430538 502 ntBASIC17.18■□□□□ 0.34
HMGCS2P54868 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS2P54868 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGCS2P54868 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGCS2P54868 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 AC051619.9-201ENST00000623237 597 ntBASIC17.18■□□□□ 0.34
HMGCS2P54868 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS2P54868 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS2P54868 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS2P54868 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGCS2P54868 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGCS2P54868 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGCS2P54868 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 STK26-204ENST00000481105 1835 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGCS2P54868 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 MROH4P-201ENST00000431302 1578 ntBASIC17.17■□□□□ 0.34
HMGCS2P54868 AL035414.1-201ENST00000451327 857 ntBASIC17.17■□□□□ 0.34
HMGCS2P54868 RN7SL258P-201ENST00000478664 300 ntBASIC17.17■□□□□ 0.34
HMGCS2P54868 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC17.17■□□□□ 0.34
HMGCS2P54868 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 MIR4750-201ENST00000584564 56 ntBASIC17.17■□□□□ 0.34
HMGCS2P54868 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGCS2P54868 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HMGCS2P54868 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
HMGCS2P54868 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGCS2P54868 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGCS2P54868 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS2P54868 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
HMGCS2P54868 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGCS2P54868 FAM90A2P-201ENST00000511144 1395 ntBASIC17.16■□□□□ 0.34
HMGCS2P54868 FAM90A25P-201ENST00000528404 1395 ntBASIC17.16■□□□□ 0.34
HMGCS2P54868 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGCS2P54868 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS2P54868 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGCS2P54868 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
HMGCS2P54868 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS2P54868 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGCS2P54868 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS2P54868 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGCS2P54868 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.16■□□□□ 0.34
HMGCS2P54868 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms