RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
SH3RF1-201ENST00000284637 SUPT5HO00267 1087 aaKnown RBP27.15■■□□□ 1.94
SH3RF1-201ENST00000284637 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
SH3RF1-201ENST00000284637 NISCHQ9Y2I1 1504 aa26.5■■□□□ 1.83
SH3RF1-201ENST00000284637 PELP1Q8IZL8 1130 aaKnown RBP26.45■■□□□ 1.82
SH3RF1-201ENST00000284637 EHMT2Q96KQ7 1210 aa26.37■■□□□ 1.81
SH3RF1-201ENST00000284637 MYT1Q01538 1121 aa26.17■■□□□ 1.78
SH3RF1-201ENST00000284637 PCGF6Q9BYE7 350 aa25.84■■□□□ 1.73
SH3RF1-201ENST00000284637 FAM9AQ8IZU1 332 aaPredicted RBP25.64■■□□□ 1.7
SH3RF1-201ENST00000284637 APLP2Q06481 763 aa25.54■■□□□ 1.68
SH3RF1-201ENST00000284637 TTBK1Q5TCY1 1321 aaPredicted RBP25.54■■□□□ 1.68
SH3RF1-201ENST00000284637 CENPBP07199 599 aaPredicted RBP25.45■■□□□ 1.66
SH3RF1-201ENST00000284637 ZEB1P37275 1124 aaPredicted RBP25.31■■□□□ 1.64
SH3RF1-201ENST00000284637 CCER1Q8TC90 406 aaPredicted RBP25.14■■□□□ 1.62
SH3RF1-201ENST00000284637 HRCP23327 699 aa25.08■■□□□ 1.61
SH3RF1-201ENST00000284637 RANGAP1P46060 587 aaPredicted RBP25.01■■□□□ 1.59
SH3RF1-201ENST00000284637 TRIM41Q8WV44 630 aa24.99■■□□□ 1.59
SH3RF1-201ENST00000284637 ERICH6Q7L0X2 663 aa24.99■■□□□ 1.59
SH3RF1-201ENST00000284637 YTHDC1Q96MU7 727 aaKnown RBP24.87■■□□□ 1.57
SH3RF1-201ENST00000284637 PPARGC1BQ86YN6 1023 aaKnown RBP24.7■■□□□ 1.54
SH3RF1-201ENST00000284637 UBTFP17480 764 aaKnown RBP24.67■■□□□ 1.54
SH3RF1-201ENST00000284637 ATP1B4Q9UN42 357 aaPredicted RBP24.61■■□□□ 1.53
SH3RF1-201ENST00000284637 NEFLP07196 543 aa24.58■■□□□ 1.53
SH3RF1-201ENST00000284637 TRIM26Q12899 539 aaPredicted RBP24.54■■□□□ 1.52
SH3RF1-201ENST00000284637 LOC105371045A0A1W2PR82 267 aa24.32■■□□□ 1.48
SH3RF1-201ENST00000284637 CHIC1Q5VXU3 224 aa24.17■■□□□ 1.46
SH3RF1-201ENST00000284637 ITGAEP38570 1179 aa24.05■■□□□ 1.44
SH3RF1-201ENST00000284637 HNRNPUL2Q1KMD3 747 aaKnown RBP24.01■■□□□ 1.43
SH3RF1-201ENST00000284637 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.92■■□□□ 1.42
SH3RF1-201ENST00000284637 GTF3C3Q9Y5Q9 886 aa23.92■■□□□ 1.42
SH3RF1-201ENST00000284637 DIEXFQ68CQ4 756 aaKnown RBP23.86■■□□□ 1.41
SH3RF1-201ENST00000284637 POLR3GLQ9BT43 218 aa23.86■■□□□ 1.41
SH3RF1-201ENST00000284637 DAXXQ9UER7 740 aaPredicted RBP23.79■■□□□ 1.4
SH3RF1-201ENST00000284637 CNGB1Q14028 1251 aaPredicted RBP23.79■■□□□ 1.4
SH3RF1-201ENST00000284637 ACIN1Q9UKV3 1341 aaKnown RBP23.7■■□□□ 1.38
SH3RF1-201ENST00000284637 RTL5Q5HYW3 569 aaPredicted RBP23.54■■□□□ 1.36
SH3RF1-201ENST00000284637 BCANQ96GW7 911 aa23.47■■□□□ 1.35
SH3RF1-201ENST00000284637 MYT1LQ9UL68 1186 aa23.39■■□□□ 1.34
SH3RF1-201ENST00000284637 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
SH3RF1-201ENST00000284637 FAM50AQ14320 339 aaKnown RBP23.3■■□□□ 1.32
SH3RF1-201ENST00000284637 NEUROD1Q13562 356 aa23.3■■□□□ 1.32
SH3RF1-201ENST00000284637 ZNF316A6NFI3 1004 aaPredicted RBP23.29■■□□□ 1.32
SH3RF1-201ENST00000284637 CLSPNQ9HAW4 1339 aa23.28■■□□□ 1.32
SH3RF1-201ENST00000284637 SLC4A1APQ9BWU0 796 aaKnown RBP23.18■■□□□ 1.3
SH3RF1-201ENST00000284637 TRIM52Q96A61 297 aa23.14■■□□□ 1.3
SH3RF1-201ENST00000284637 ANP32CO43423 234 aa23.12■■□□□ 1.29
SH3RF1-201ENST00000284637 CDK11AQ9UQ88 783 aaPredicted RBP23.1■■□□□ 1.29
SH3RF1-201ENST00000284637 ZNF326Q5BKZ1 582 aaKnown RBP22.98■■□□□ 1.27
SH3RF1-201ENST00000284637 PABPN1Q86U42 306 aaKnown RBP eCLIP22.82■■□□□ 1.24
SH3RF1-201ENST00000284637 EIF5BO60841 1220 aaKnown RBP22.81■■□□□ 1.24
SH3RF1-201ENST00000284637 DCAF1Q9Y4B6 1507 aa22.79■■□□□ 1.24
SH3RF1-201ENST00000284637 ANP32EQ9BTT0 268 aa22.75■■□□□ 1.23
SH3RF1-201ENST00000284637 FKBP8Q14318 412 aa22.74■■□□□ 1.23
SH3RF1-201ENST00000284637 CSRNP3Q8WYN3 585 aa22.72■■□□□ 1.23
SH3RF1-201ENST00000284637 ANP32AP39687 249 aaKnown RBP22.71■■□□□ 1.23
SH3RF1-201ENST00000284637 GLIPR1L2Q4G1C9 344 aa22.68■■□□□ 1.22
SH3RF1-201ENST00000284637 NPM2Q86SE8 214 aaKnown RBP22.68■■□□□ 1.22
SH3RF1-201ENST00000284637 P3H3Q8IVL6 736 aa22.67■■□□□ 1.22
SH3RF1-201ENST00000284637 BCL11AQ9H165 835 aa22.66■■□□□ 1.22
SH3RF1-201ENST00000284637 CANXP27824 592 aaKnown RBP22.63■■□□□ 1.21
SH3RF1-201ENST00000284637 ABCC9O60706 1549 aa22.61■■□□□ 1.21
SH3RF1-201ENST00000284637 ZBTB47Q9UFB7 747 aaPredicted RBP22.59■■□□□ 1.21
SH3RF1-201ENST00000284637 ARID3CA6NKF2 412 aa22.57■■□□□ 1.2
SH3RF1-201ENST00000284637 DDX10Q13206 875 aaKnown RBP22.56■■□□□ 1.2
SH3RF1-201ENST00000284637 HNRNPUQ00839 825 aaKnown RBP eCLIP22.54■■□□□ 1.2
SH3RF1-201ENST00000284637 FAM9BQ8IZU0 186 aa22.45■■□□□ 1.18
SH3RF1-201ENST00000284637 FBLN2P98095 1184 aa22.44■■□□□ 1.18
SH3RF1-201ENST00000284637 MIER1Q8N108 512 aa22.43■■□□□ 1.18
SH3RF1-201ENST00000284637 TONSLQ96HA7 1378 aa22.41■■□□□ 1.18
SH3RF1-201ENST00000284637 NBR1Q14596 966 aa22.4■■□□□ 1.18
SH3RF1-201ENST00000284637 ZNF777Q9ULD5 760 aaPredicted RBP22.38■■□□□ 1.17
SH3RF1-201ENST00000284637 SLC24A1O60721 1099 aa22.36■■□□□ 1.17
SH3RF1-201ENST00000284637 SALL2Q9Y467 1007 aaPredicted RBP22.35■■□□□ 1.17
SH3RF1-201ENST00000284637 NEFMP07197 916 aa22.3■■□□□ 1.16
SH3RF1-201ENST00000284637 CCDC136Q96JN2 1154 aa22.28■■□□□ 1.16
SH3RF1-201ENST00000284637 IRX6P78412 446 aaPredicted RBP22.28■■□□□ 1.16
SH3RF1-201ENST00000284637 HIRIP3Q9BW71 556 aaPredicted RBP22.23■■□□□ 1.15
SH3RF1-201ENST00000284637 HSP90AA1P07900 732 aaKnown RBP22.2■■□□□ 1.14
SH3RF1-201ENST00000284637 TMC1Q8TDI8 760 aa22.17■■□□□ 1.14
SH3RF1-201ENST00000284637 MRS2Q9HD23 443 aa22.17■■□□□ 1.14
SH3RF1-201ENST00000284637 ANP32BQ92688 251 aaKnown RBP22.16■■□□□ 1.14
SH3RF1-201ENST00000284637 CHIC2Q9UKJ5 165 aa22.16■■□□□ 1.14
SH3RF1-201ENST00000284637 UPF2Q9HAU5 1272 aaKnown RBP22.15■■□□□ 1.14
SH3RF1-201ENST00000284637 MYO15BQ96JP2 1530 aa22.13■■□□□ 1.13
SH3RF1-201ENST00000284637 ARXQ96QS3 562 aa22.13■■□□□ 1.13
SH3RF1-201ENST00000284637 CCDC180Q9P1Z9 1646 aa22.09■■□□□ 1.13
SH3RF1-201ENST00000284637 SUPT16HQ9Y5B9 1047 aaKnown RBP22.06■■□□□ 1.12
SH3RF1-201ENST00000284637 CHGAP10645 457 aaKnown RBP22.01■■□□□ 1.11
SH3RF1-201ENST00000284637 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.99■■□□□ 1.11
SH3RF1-201ENST00000284637 KDM2AQ9Y2K7 1162 aa21.97■■□□□ 1.11
SH3RF1-201ENST00000284637 SCRIBQ14160 1630 aa21.97■■□□□ 1.11
SH3RF1-201ENST00000284637 ZCCHC6Q5VYS8 1495 aaKnown RBP21.94■■□□□ 1.1
SH3RF1-201ENST00000284637 WDR43Q15061 677 aaKnown RBP eCLIP21.93■■□□□ 1.1
SH3RF1-201ENST00000284637 SENP3-EIF4A1A0A087X0R7 540 aa21.92■■□□□ 1.1
SH3RF1-201ENST00000284637 CLIP1P30622 1438 aa21.92■■□□□ 1.1
SH3RF1-201ENST00000284637 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.92■■□□□ 1.1
SH3RF1-201ENST00000284637 EIF4G2P78344 907 aaKnown RBP eCLIP21.9■■□□□ 1.1
SH3RF1-201ENST00000284637 DEKP35659 375 aaKnown RBP21.9■■□□□ 1.1
SH3RF1-201ENST00000284637 RTN4Q9NQC3 1192 aaKnown RBP21.89■■□□□ 1.09
SH3RF1-201ENST00000284637 ERICH6BQ5W0A0 696 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms