Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PHYKPL-204ENST00000474052 1539 ntTSL 1 (best)25.31■■□□□ 1.645e-6■■■■■ 86.2
SF3B1O75533 FRMD8-205ENST00000526201 568 ntTSL 525.1■■□□□ 1.614e-7■■■■■ 86.2
SF3B1O75533 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.64e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.02■■□□□ 1.63e-13■■■■■ 86.2
SF3B1O75533 PCK2-214ENST00000560736 897 ntTSL 325.02■■□□□ 1.64e-7■■■■■ 86.2
SF3B1O75533 KCNJ11-203ENST00000526912 781 ntTSL 324.64■■□□□ 1.544e-7■■■■■ 86.2
SF3B1O75533 ATP6V0A2-205ENST00000540368 1479 ntTSL 1 (best)24.61■■□□□ 1.534e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.58■■□□□ 1.523e-13■■■■■ 86.2
SF3B1O75533 TAF1B-206ENST00000469895 681 ntTSL 324.35■■□□□ 1.494e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-206ENST00000413051 904 ntTSL 524.3■■□□□ 1.484e-7■■■■■ 86.2
SF3B1O75533 PTCD3-203ENST00000409783 587 ntTSL 524.25■■□□□ 1.474e-7■■■■■ 86.2
SF3B1O75533 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.23■■□□□ 1.474e-7■■■■■ 86.2
SF3B1O75533 DVL2-210ENST00000575756 1136 ntTSL 524.16■■□□□ 1.463e-8■■■■■ 86.2
SF3B1O75533 ARHGDIA-211ENST00000582984 823 ntTSL 324.13■■□□□ 1.454e-7■■■■■ 86.2
SF3B1O75533 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.454e-7■■■■■ 86.2
SF3B1O75533 CIPC-208ENST00000557115 882 ntTSL 423.91■■□□□ 1.424e-7■■■■■ 86.2
SF3B1O75533 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.424e-7■■■■■ 86.2
SF3B1O75533 RFWD3-208ENST00000575113 706 ntTSL 323.82■■□□□ 1.44e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.56■■□□□ 1.364e-7■■■■■ 86.2
SF3B1O75533 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.56■■□□□ 1.364e-7■■■■■ 86.2
SF3B1O75533 FRMD8-206ENST00000528854 572 ntTSL 223.52■■□□□ 1.364e-7■■■■■ 86.2
SF3B1O75533 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.352e-7■■■■■ 86.2
SF3B1O75533 SNX1-210ENST00000560260 1326 ntTSL 1 (best)23.49■■□□□ 1.354e-7■■■■■ 86.2
SF3B1O75533 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC23.47■■□□□ 1.354e-7■■■■■ 86.2
SF3B1O75533 SNX1-206ENST00000559389 753 ntTSL 523.42■■□□□ 1.344e-7■■■■■ 86.2
SF3B1O75533 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.4■■□□□ 1.345e-6■■■■■ 86.2
SF3B1O75533 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.334e-7■■■■■ 86.2
SF3B1O75533 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.38■■□□□ 1.334e-7■■■■■ 86.2
SF3B1O75533 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.314e-7■■■■■ 86.2
SF3B1O75533 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.314e-7■■■■■ 86.2
SF3B1O75533 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.34e-7■■■■■ 86.2
SF3B1O75533 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.294e-7■■■■■ 86.2
SF3B1O75533 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.04■■□□□ 1.284e-7■■■■■ 86.2
SF3B1O75533 KPTN-209ENST00000602193 588 ntTSL 423.02■■□□□ 1.284e-7■■■■■ 86.2
SF3B1O75533 NCOR1-207ENST00000430577 1204 ntTSL 522.9■■□□□ 1.264e-7■■■■■ 86.2
SF3B1O75533 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.264e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-202ENST00000443038 522 ntTSL 422.89■■□□□ 1.264e-7■■■■■ 86.2
SF3B1O75533 ARF1-206ENST00000473949 578 ntTSL 522.89■■□□□ 1.264e-7■■■■■ 86.2
SF3B1O75533 PAIP1-206ENST00000508537 752 ntTSL 222.82■■□□□ 1.244e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-217ENST00000598493 808 ntTSL 522.82■■□□□ 1.243e-13■■■■■ 86.2
SF3B1O75533 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.234e-7■■■■■ 86.2
SF3B1O75533 SEC13-207ENST00000397105 883 ntTSL 222.71■■□□□ 1.234e-7■■■■■ 86.2
SF3B1O75533 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.7■■□□□ 1.224e-7■■■■■ 86.2
SF3B1O75533 PTDSS2-208ENST00000528617 532 ntTSL 222.64■■□□□ 1.224e-7■■■■■ 86.2
SF3B1O75533 HSPG2-205ENST00000427897 589 ntTSL 522.63■■□□□ 1.214e-7■■■■■ 86.2
SF3B1O75533 POLA2-206ENST00000532469 1499 ntTSL 222.52■■□□□ 1.24e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-203ENST00000422128 596 ntTSL 422.51■■□□□ 1.194e-7■■■■■ 86.2
SF3B1O75533 CDK5RAP2-214ENST00000481266 970 ntTSL 522.47■■□□□ 1.198e-6■■■■■ 86.2
SF3B1O75533 MTG1-204ENST00000473735 2212 ntTSL 522.4■■□□□ 1.184e-7■■■■■ 86.2
SF3B1O75533 PTDSS2-202ENST00000525059 1258 ntTSL 1 (best)22.35■■□□□ 1.174e-7■■■■■ 86.2
SF3B1O75533 AP4B1-205ENST00000369571 980 ntTSL 322.31■■□□□ 1.164e-7■■■■■ 86.2
SF3B1O75533 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.27■■□□□ 1.164e-7■■■■■ 86.2
SF3B1O75533 PIP5K1C-208ENST00000637724 435 ntTSL 322.23■■□□□ 1.153e-8■■■■■ 86.2
SF3B1O75533 TRIOBP-208ENST00000418339 939 ntAPPRIS ALT2 TSL 222.23■■□□□ 1.154e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-212ENST00000596125 644 ntTSL 222.2■■□□□ 1.143e-13■■■■■ 86.2
SF3B1O75533 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.19■■□□□ 1.142e-6■■■■■ 86.2
SF3B1O75533 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.03■■□□□ 1.123e-8■■■■■ 86.2
SF3B1O75533 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC22.01■■□□□ 1.114e-7■■■■■ 86.2
SF3B1O75533 PTCD3-202ENST00000409326 522 ntTSL 422.01■■□□□ 1.114e-7■■■■■ 86.2
SF3B1O75533 PTCD3-206ENST00000465560 747 ntTSL 322.01■■□□□ 1.114e-7■■■■■ 86.2
SF3B1O75533 SLC25A16-204ENST00000491102 538 ntTSL 421.99■■□□□ 1.113e-8■■■■■ 86.2
SF3B1O75533 TRAPPC6A-203ENST00000587818 433 ntTSL 221.92■■□□□ 1.14e-7■■■■■ 86.2
SF3B1O75533 WDR5-203ENST00000608937 705 ntTSL 221.88■■□□□ 1.094e-7■■■■■ 86.2
SF3B1O75533 KPTN-205ENST00000595554 806 ntTSL 321.8■■□□□ 1.084e-7■■■■■ 86.2
SF3B1O75533 PHYKPL-209ENST00000489262 2780 ntTSL 221.72■■□□□ 1.075e-6■■■■■ 86.2
SF3B1O75533 RNF220-209ENST00000474064 2734 ntTSL 221.58■■□□□ 1.045e-6■■■■■ 86.2
SF3B1O75533 SNX25-204ENST00000506896 518 ntTSL 221.57■■□□□ 1.044e-7■■■■■ 86.2
SF3B1O75533 NECAB3-215ENST00000494174 859 ntTSL 521.46■■□□□ 1.034e-6■■■■■ 86.2
SF3B1O75533 NECAB3-217ENST00000606106 591 ntTSL 421.46■■□□□ 1.034e-6■■■■■ 86.2
SF3B1O75533 PTDSS2-204ENST00000526558 469 ntTSL 321.32■■□□□ 14e-7■■■■■ 86.2
SF3B1O75533 PEX5-219ENST00000545574 878 ntTSL 521.28■■□□□ 14e-7■■■■■ 86.2
SF3B1O75533 TNFRSF10B-206ENST00000520109 674 ntTSL 221.15■□□□□ 0.984e-7■■■■■ 86.2
SF3B1O75533 RNF220-205ENST00000440132 1200 ntTSL 221.14■□□□□ 0.975e-6■■■■■ 86.2
SF3B1O75533 ANKS3-214ENST00000590147 723 ntTSL 521.13■□□□□ 0.974e-7■■■■■ 86.2
SF3B1O75533 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.11■□□□□ 0.974e-7■■■■■ 86.2
SF3B1O75533 TWSG1-203ENST00000583147 2311 ntTSL 221.07■□□□□ 0.963e-8■■■■■ 86.2
SF3B1O75533 MVB12A-209ENST00000528997 786 ntTSL 220.9■□□□□ 0.944e-7■■■■■ 86.2
SF3B1O75533 MELTF-206ENST00000489445 317 ntTSL 220.88■□□□□ 0.934e-7■■■■■ 86.2
SF3B1O75533 SORD-207ENST00000560488 584 ntTSL 520.81■□□□□ 0.924e-7■■■■■ 86.2
SF3B1O75533 TADA2A-203ENST00000614112 561 ntTSL 420.79■□□□□ 0.924e-7■■■■■ 86.2
SF3B1O75533 KCTD20-201ENST00000265344 1339 ntTSL 220.75■□□□□ 0.914e-7■■■■■ 86.2
SF3B1O75533 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.74■□□□□ 0.914e-7■■■■■ 86.2
SF3B1O75533 ARHGDIA-212ENST00000583111 574 ntTSL 220.7■□□□□ 0.94e-7■■■■■ 86.2
SF3B1O75533 PTCD3-210ENST00000473829 587 ntTSL 320.63■□□□□ 0.894e-7■■■■■ 86.2
SF3B1O75533 MFHAS1-204ENST00000521881 577 ntTSL 320.61■□□□□ 0.894e-7■■■■■ 86.2
SF3B1O75533 FGFR3-209ENST00000507588 336 ntTSL 1 (best)20.59■□□□□ 0.894e-7■■■■■ 86.2
SF3B1O75533 USP11-205ENST00000467378 696 ntTSL 320.58■□□□□ 0.894e-7■■■■■ 86.2
SF3B1O75533 MTG1-207ENST00000495014 871 ntTSL 320.57■□□□□ 0.884e-7■■■■■ 86.2
SF3B1O75533 TAF1B-203ENST00000404869 505 ntTSL 520.53■□□□□ 0.884e-7■■■■■ 86.2
SF3B1O75533 KPTN-203ENST00000594208 1623 ntTSL 220.5■□□□□ 0.874e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-205ENST00000594018 934 ntTSL 520.5■□□□□ 0.873e-13■■■■■ 86.2
SF3B1O75533 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.45■□□□□ 0.864e-7■■■■■ 86.2
SF3B1O75533 MIB2-229ENST00000514234 2562 ntTSL 220.43■□□□□ 0.868e-11■■■■■ 86.2
SF3B1O75533 PPP3CC-206ENST00000522000 460 ntTSL 220.42■□□□□ 0.864e-7■■■■■ 86.2
SF3B1O75533 TBRG1-205ENST00000473629 1634 ntTSL 520.4■□□□□ 0.864e-7■■■■■ 86.2
SF3B1O75533 RFWD3-203ENST00000571776 936 ntTSL 220.4■□□□□ 0.864e-7■■■■■ 86.2
SF3B1O75533 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.38■□□□□ 0.854e-7■■■■■ 86.2
SF3B1O75533 FAM49B-208ENST00000518344 554 ntTSL 320.36■□□□□ 0.854e-7■■■■■ 86.2
SF3B1O75533 MVB12A-207ENST00000528732 570 ntTSL 220.32■□□□□ 0.844e-7■■■■■ 86.2
SF3B1O75533 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.31■□□□□ 0.843e-13■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1176.2 ms