RNA–Protein interactions for RNA: ENST00000474064.5

RNF220-209, Transcript of ring finger protein 220, humanhuman

TSL 2

Gene RNF220, Length 2,734 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-209ENST00000474064 NISCHQ9Y2I1 1504 aa45.75■■■■■ 4.91
RNF220-209ENST00000474064 CCDC180Q9P1Z9 1646 aa39.33■■■■□ 3.89
RNF220-209ENST00000474064 ZCCHC6Q5VYS8 1495 aaKnown RBP38.52■■■■□ 3.76
RNF220-209ENST00000474064 SHROOM4Q9ULL8 1493 aa38.34■■■■□ 3.73
RNF220-209ENST00000474064 DCAF8L2P0C7V8 631 aa38.22■■■■□ 3.71
RNF220-209ENST00000474064 DCAF1Q9Y4B6 1507 aa37.56■■■■□ 3.6
RNF220-209ENST00000474064 ABCC9O60706 1549 aa37.19■■■■□ 3.54
RNF220-209ENST00000474064 SUPT5HO00267 1087 aaKnown RBP37.19■■■■□ 3.54
RNF220-209ENST00000474064 MYO15BQ96JP2 1530 aa36.81■■■■□ 3.48
RNF220-209ENST00000474064 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
RNF220-209ENST00000474064 NACADO15069 1562 aa36.59■■■■□ 3.45
RNF220-209ENST00000474064 RB1CC1Q8TDY2 1594 aa36.2■■■■□ 3.38
RNF220-209ENST00000474064 RSF1Q96T23 1441 aaPredicted RBP35.85■■■■□ 3.33
RNF220-209ENST00000474064 CECR2Q9BXF3 1484 aa35.72■■■■□ 3.31
RNF220-209ENST00000474064 CHIC1Q5VXU3 224 aa35.7■■■■□ 3.31
RNF220-209ENST00000474064 UNC13AQ9UPW8 1703 aa35.55■■■■□ 3.28
RNF220-209ENST00000474064 MROH2BQ7Z745 1585 aa35.51■■■■□ 3.28
RNF220-209ENST00000474064 PABPN1Q86U42 306 aaKnown RBP eCLIP35.38■■■■□ 3.25
RNF220-209ENST00000474064 WIZO95785 1651 aa35.26■■■■□ 3.24
RNF220-209ENST00000474064 BAZ1AQ9NRL2 1556 aaPredicted RBP35.22■■■■□ 3.23
RNF220-209ENST00000474064 BICRAQ9NZM4 1560 aa35.18■■■■□ 3.22
RNF220-209ENST00000474064 SMARCA4P51532 1647 aa35.03■■■■□ 3.2
RNF220-209ENST00000474064 TRIM41Q8WV44 630 aa34.73■■■■□ 3.15
RNF220-209ENST00000474064 TOP2AP11388 1531 aaKnown RBP34.73■■■■□ 3.15
RNF220-209ENST00000474064 LOC105371045A0A1W2PR82 267 aa34.61■■■■□ 3.13
RNF220-209ENST00000474064 HRCP23327 699 aa34.59■■■■□ 3.13
RNF220-209ENST00000474064 CCDC88BA6NC98 1476 aa34.55■■■■□ 3.12
RNF220-209ENST00000474064 SMARCA2P51531 1590 aa34.49■■■■□ 3.11
RNF220-209ENST00000474064 FAM9AQ8IZU1 332 aaPredicted RBP34.39■■■■□ 3.1
RNF220-209ENST00000474064 PEG3Q9GZU2 1588 aa34.39■■■■□ 3.1
RNF220-209ENST00000474064 EIF4G1Q04637 1599 aaKnown RBP34.37■■■■□ 3.09
RNF220-209ENST00000474064 ATAD2BQ9ULI0 1458 aa34.35■■■■□ 3.09
RNF220-209ENST00000474064 BAZ1BQ9UIG0 1483 aaKnown RBP34.23■■■■□ 3.07
RNF220-209ENST00000474064 ABCC8Q09428 1581 aa34.15■■■■□ 3.06
RNF220-209ENST00000474064 EHMT2Q96KQ7 1210 aa34.12■■■■□ 3.05
RNF220-209ENST00000474064 PCGF6Q9BYE7 350 aa33.93■■■■□ 3.02
RNF220-209ENST00000474064 PPARGC1BQ86YN6 1023 aaKnown RBP33.9■■■■□ 3.02
RNF220-209ENST00000474064 NCAPD3P42695 1498 aa33.85■■■■□ 3.01
RNF220-209ENST00000474064 HMGXB3Q12766 1538 aa33.77■■■■□ 3
RNF220-209ENST00000474064 WRNQ14191 1432 aaPredicted RBP eCLIP33.73■■■□□ 2.99
RNF220-209ENST00000474064 SOGA1O94964 1423 aa33.66■■■□□ 2.98
RNF220-209ENST00000474064 SYNJ1O43426 1573 aa33.56■■■□□ 2.96
RNF220-209ENST00000474064 RUSC2Q8N2Y8 1516 aa33.53■■■□□ 2.96
RNF220-209ENST00000474064 CC2D2AQ9P2K1 1620 aa33.48■■■□□ 2.95
RNF220-209ENST00000474064 CSRNP3Q8WYN3 585 aa33.42■■■□□ 2.94
RNF220-209ENST00000474064 EEA1Q15075 1411 aa33.36■■■□□ 2.93
RNF220-209ENST00000474064 CFTRP13569 1480 aa33.32■■■□□ 2.92
RNF220-209ENST00000474064 PELP1Q8IZL8 1130 aaKnown RBP33.28■■■□□ 2.92
RNF220-209ENST00000474064 TRIM26Q12899 539 aaPredicted RBP33.26■■■□□ 2.91
RNF220-209ENST00000474064 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
RNF220-209ENST00000474064 UBTFP17480 764 aaKnown RBP33.22■■■□□ 2.91
RNF220-209ENST00000474064 CADPSQ9ULU8 1353 aa33.15■■■□□ 2.9
RNF220-209ENST00000474064 CUX1P39880 1505 aa33.13■■■□□ 2.89
RNF220-209ENST00000474064 BIVM-ERCC5R4GMW8 1640 aa33.12■■■□□ 2.89
RNF220-209ENST00000474064 TNIKQ9UKE5 1360 aa33.11■■■□□ 2.89
RNF220-209ENST00000474064 CEP162Q5TB80 1403 aa33.09■■■□□ 2.89
RNF220-209ENST00000474064 GOLGA3Q08378 1498 aa33.09■■■□□ 2.89
RNF220-209ENST00000474064 CEP164Q9UPV0 1460 aa33■■■□□ 2.87
RNF220-209ENST00000474064 PRDM2Q13029 1718 aa32.98■■■□□ 2.87
RNF220-209ENST00000474064 KIF21BO75037 1637 aa32.93■■■□□ 2.86
RNF220-209ENST00000474064 RAPGEF2Q9Y4G8 1499 aa32.89■■■□□ 2.86
RNF220-209ENST00000474064 DNAJC5BQ9UF47 199 aa32.86■■■□□ 2.85
RNF220-209ENST00000474064 NESP48681 1621 aa32.85■■■□□ 2.85
RNF220-209ENST00000474064 FANCD2Q9BXW9 1451 aa32.82■■■□□ 2.84
RNF220-209ENST00000474064 RANGAP1P46060 587 aaPredicted RBP32.8■■■□□ 2.84
RNF220-209ENST00000474064 TTBK1Q5TCY1 1321 aaPredicted RBP32.78■■■□□ 2.84
RNF220-209ENST00000474064 KIF27Q86VH2 1401 aa32.78■■■□□ 2.84
RNF220-209ENST00000474064 SCAF1Q9H7N4 1312 aaKnown RBP32.71■■■□□ 2.83
RNF220-209ENST00000474064 FGD5Q6ZNL6 1462 aa32.69■■■□□ 2.82
RNF220-209ENST00000474064 CLIP1P30622 1438 aa32.68■■■□□ 2.82
RNF220-209ENST00000474064 PRXQ9BXM0 1461 aa32.67■■■□□ 2.82
RNF220-209ENST00000474064 CUX2O14529 1486 aa32.65■■■□□ 2.82
RNF220-209ENST00000474064 ERICH3Q5RHP9 1530 aa32.57■■■□□ 2.8
RNF220-209ENST00000474064 LAMC3Q9Y6N6 1575 aa32.55■■■□□ 2.8
RNF220-209ENST00000474064 ZEB1P37275 1124 aaPredicted RBP32.51■■■□□ 2.79
RNF220-209ENST00000474064 DNMBPQ6XZF7 1577 aa32.5■■■□□ 2.79
RNF220-209ENST00000474064 TOPBP1Q92547 1522 aa32.5■■■□□ 2.79
RNF220-209ENST00000474064 IGF1RP08069 1367 aa32.49■■■□□ 2.79
RNF220-209ENST00000474064 RAD54L2Q9Y4B4 1467 aa32.47■■■□□ 2.79
RNF220-209ENST00000474064 POLA1P09884 1462 aaPredicted RBP32.42■■■□□ 2.78
RNF220-209ENST00000474064 VPS8Q8N3P4 1428 aa32.41■■■□□ 2.78
RNF220-209ENST00000474064 PDS5BQ9NTI5 1447 aa32.4■■■□□ 2.78
RNF220-209ENST00000474064 URB2Q14146 1524 aaKnown RBP32.38■■■□□ 2.77
RNF220-209ENST00000474064 CARMIL1Q5VZK9 1371 aa32.35■■■□□ 2.77
RNF220-209ENST00000474064 APLP2Q06481 763 aa32.29■■■□□ 2.76
RNF220-209ENST00000474064 ABCA10Q8WWZ4 1543 aa32.28■■■□□ 2.76
RNF220-209ENST00000474064 KIF21AQ7Z4S6 1674 aa32.27■■■□□ 2.76
RNF220-209ENST00000474064 ARAP1Q96P48 1450 aa32.24■■■□□ 2.75
RNF220-209ENST00000474064 TDRD9Q8NDG6 1382 aaKnown RBP32.15■■■□□ 2.74
RNF220-209ENST00000474064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.13■■■□□ 2.73
RNF220-209ENST00000474064 ARHGAP35Q9NRY4 1499 aa32.13■■■□□ 2.73
RNF220-209ENST00000474064 WDR97A6NE52 1622 aa32.03■■■□□ 2.72
RNF220-209ENST00000474064 CCER1Q8TC90 406 aaPredicted RBP32■■■□□ 2.71
RNF220-209ENST00000474064 GAPVD1Q14C86 1478 aa31.98■■■□□ 2.71
RNF220-209ENST00000474064 P3H3Q8IVL6 736 aa31.97■■■□□ 2.71
RNF220-209ENST00000474064 KANK4Q5T7N3 995 aaPredicted RBP31.96■■■□□ 2.71
RNF220-209ENST00000474064 MYT1Q01538 1121 aa31.95■■■□□ 2.71
RNF220-209ENST00000474064 CUL7Q14999 1698 aa31.95■■■□□ 2.7
RNF220-209ENST00000474064 ABCA5Q8WWZ7 1642 aa31.94■■■□□ 2.7
RNF220-209ENST00000474064 MRC2Q9UBG0 1479 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms