Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 SYNRG-229ENST00000621136 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
AP1S3Q96PC3 KIF14-201ENST00000367350 7274 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CRYGEP-201ENST00000412192 528 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC092474.2-201ENST00000424288 719 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 FAM197Y8-203ENST00000450145 560 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC012640.2-201ENST00000561606 901 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC023141.13-201ENST00000604991 943 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AL161645.1-201ENST00000622716 1255 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AC010507.1-201ENST00000633895 436 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 MBLAC2-202ENST00000514906 1936 ntBASIC11.52□□□□□ -0.57
AP1S3Q96PC3 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 KCNH1-209ENST00000639952 8075 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 CDH4-203ENST00000614565 6513 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC11.52□□□□□ -0.57
AP1S3Q96PC3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 GRM4-202ENST00000374181 7275 ntTSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 TRIOBP-204ENST00000406386 10129 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 CNTNAP3B-211ENST00000612828 7455 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AC140658.5-201ENST00000438532 169 ntBASIC11.51□□□□□ -0.57
AP1S3Q96PC3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AC092910.1-201ENST00000482027 1129 ntBASIC11.51□□□□□ -0.57
AP1S3Q96PC3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AC096734.2-201ENST00000562054 433 ntBASIC11.51□□□□□ -0.57
AP1S3Q96PC3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms