RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, humanhuman

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-222ENST00000495522 NISCHQ9Y2I1 1504 aa32.65■■■□□ 2.82
CALD1-222ENST00000495522 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
CALD1-222ENST00000495522 ZCCHC6Q5VYS8 1495 aaKnown RBP27.59■■■□□ 2.01
CALD1-222ENST00000495522 SHROOM4Q9ULL8 1493 aa27.38■■□□□ 1.97
CALD1-222ENST00000495522 DCAF1Q9Y4B6 1507 aa26.92■■□□□ 1.9
CALD1-222ENST00000495522 DCAF8L2P0C7V8 631 aa26.86■■□□□ 1.89
CALD1-222ENST00000495522 SUPT5HO00267 1087 aaKnown RBP26.74■■□□□ 1.87
CALD1-222ENST00000495522 ABCC9O60706 1549 aa26.41■■□□□ 1.82
CALD1-222ENST00000495522 MYO15BQ96JP2 1530 aa26.26■■□□□ 1.8
CALD1-222ENST00000495522 SCRIBQ14160 1630 aa26.01■■□□□ 1.76
CALD1-222ENST00000495522 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
CALD1-222ENST00000495522 NACADO15069 1562 aa25.92■■□□□ 1.74
CALD1-222ENST00000495522 RSF1Q96T23 1441 aaPredicted RBP25.68■■□□□ 1.7
CALD1-222ENST00000495522 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
CALD1-222ENST00000495522 CECR2Q9BXF3 1484 aa25.37■■□□□ 1.65
CALD1-222ENST00000495522 MROH2BQ7Z745 1585 aa25.3■■□□□ 1.64
CALD1-222ENST00000495522 UNC13AQ9UPW8 1703 aa25.2■■□□□ 1.62
CALD1-222ENST00000495522 WIZO95785 1651 aa25.14■■□□□ 1.62
CALD1-222ENST00000495522 BAZ1AQ9NRL2 1556 aaPredicted RBP25.13■■□□□ 1.61
CALD1-222ENST00000495522 LOC105371045A0A1W2PR82 267 aa25.08■■□□□ 1.61
CALD1-222ENST00000495522 TRIM41Q8WV44 630 aa25.03■■□□□ 1.6
CALD1-222ENST00000495522 SMARCA4P51532 1647 aa24.92■■□□□ 1.58
CALD1-222ENST00000495522 BICRAQ9NZM4 1560 aa24.91■■□□□ 1.58
CALD1-222ENST00000495522 PABPN1Q86U42 306 aaKnown RBP eCLIP24.87■■□□□ 1.57
CALD1-222ENST00000495522 TOP2AP11388 1531 aaKnown RBP24.85■■□□□ 1.57
CALD1-222ENST00000495522 PCGF6Q9BYE7 350 aa24.81■■□□□ 1.56
CALD1-222ENST00000495522 EIF4G1Q04637 1599 aaKnown RBP24.78■■□□□ 1.56
CALD1-222ENST00000495522 HRCP23327 699 aa24.73■■□□□ 1.55
CALD1-222ENST00000495522 FAM9AQ8IZU1 332 aaPredicted RBP24.67■■□□□ 1.54
CALD1-222ENST00000495522 SMARCA2P51531 1590 aa24.66■■□□□ 1.54
CALD1-222ENST00000495522 CCDC88BA6NC98 1476 aa24.66■■□□□ 1.54
CALD1-222ENST00000495522 TRIM26Q12899 539 aaPredicted RBP24.54■■□□□ 1.52
CALD1-222ENST00000495522 PEG3Q9GZU2 1588 aa24.53■■□□□ 1.52
CALD1-222ENST00000495522 ABCC8Q09428 1581 aa24.44■■□□□ 1.5
CALD1-222ENST00000495522 EHMT2Q96KQ7 1210 aa24.36■■□□□ 1.49
CALD1-222ENST00000495522 ATAD2BQ9ULI0 1458 aa24.32■■□□□ 1.48
CALD1-222ENST00000495522 BAZ1BQ9UIG0 1483 aaKnown RBP24.25■■□□□ 1.47
CALD1-222ENST00000495522 EEA1Q15075 1411 aa24.18■■□□□ 1.46
CALD1-222ENST00000495522 SOGA1O94964 1423 aa24.16■■□□□ 1.46
CALD1-222ENST00000495522 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.46
CALD1-222ENST00000495522 PPARGC1BQ86YN6 1023 aaKnown RBP24.09■■□□□ 1.45
CALD1-222ENST00000495522 CSRNP3Q8WYN3 585 aa24.04■■□□□ 1.44
CALD1-222ENST00000495522 SYNJ1O43426 1573 aa24.02■■□□□ 1.44
CALD1-222ENST00000495522 RUSC2Q8N2Y8 1516 aa24.02■■□□□ 1.44
CALD1-222ENST00000495522 TNIKQ9UKE5 1360 aa24.02■■□□□ 1.43
CALD1-222ENST00000495522 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
CALD1-222ENST00000495522 HMGXB3Q12766 1538 aa23.96■■□□□ 1.43
CALD1-222ENST00000495522 ZEB1P37275 1124 aaPredicted RBP23.96■■□□□ 1.43
CALD1-222ENST00000495522 NCAPD3P42695 1498 aa23.93■■□□□ 1.42
CALD1-222ENST00000495522 GOLGA3Q08378 1498 aa23.93■■□□□ 1.42
CALD1-222ENST00000495522 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
CALD1-222ENST00000495522 UBTFP17480 764 aaKnown RBP23.86■■□□□ 1.41
CALD1-222ENST00000495522 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
CALD1-222ENST00000495522 KIF21BO75037 1637 aa23.84■■□□□ 1.41
CALD1-222ENST00000495522 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
CALD1-222ENST00000495522 BIVM-ERCC5R4GMW8 1640 aa23.77■■□□□ 1.4
CALD1-222ENST00000495522 CFTRP13569 1480 aa23.65■■□□□ 1.38
CALD1-222ENST00000495522 RAPGEF2Q9Y4G8 1499 aa23.61■■□□□ 1.37
CALD1-222ENST00000495522 CLIP1P30622 1438 aa23.6■■□□□ 1.37
CALD1-222ENST00000495522 CUX1P39880 1505 aa23.59■■□□□ 1.37
CALD1-222ENST00000495522 TTBK1Q5TCY1 1321 aaPredicted RBP23.54■■□□□ 1.36
CALD1-222ENST00000495522 PRDM2Q13029 1718 aa23.54■■□□□ 1.36
CALD1-222ENST00000495522 ERICH3Q5RHP9 1530 aa23.52■■□□□ 1.36
CALD1-222ENST00000495522 DNAJC5BQ9UF47 199 aa23.51■■□□□ 1.35
CALD1-222ENST00000495522 VPS8Q8N3P4 1428 aa23.5■■□□□ 1.35
CALD1-222ENST00000495522 PRXQ9BXM0 1461 aa23.49■■□□□ 1.35
CALD1-222ENST00000495522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.48■■□□□ 1.35
CALD1-222ENST00000495522 CCER1Q8TC90 406 aaPredicted RBP23.47■■□□□ 1.35
CALD1-222ENST00000495522 KIF27Q86VH2 1401 aa23.45■■□□□ 1.34
CALD1-222ENST00000495522 CADPSQ9ULU8 1353 aa23.42■■□□□ 1.34
CALD1-222ENST00000495522 PELP1Q8IZL8 1130 aaKnown RBP23.37■■□□□ 1.33
CALD1-222ENST00000495522 APLP2Q06481 763 aa23.33■■□□□ 1.33
CALD1-222ENST00000495522 RANGAP1P46060 587 aaPredicted RBP23.3■■□□□ 1.32
CALD1-222ENST00000495522 ARAP1Q96P48 1450 aa23.26■■□□□ 1.31
CALD1-222ENST00000495522 CUX2O14529 1486 aa23.23■■□□□ 1.31
CALD1-222ENST00000495522 FGD5Q6ZNL6 1462 aa23.21■■□□□ 1.31
CALD1-222ENST00000495522 FANCD2Q9BXW9 1451 aa23.18■■□□□ 1.3
CALD1-222ENST00000495522 IGF1RP08069 1367 aa23.17■■□□□ 1.3
CALD1-222ENST00000495522 HNRNPUL2Q1KMD3 747 aaKnown RBP23.12■■□□□ 1.29
CALD1-222ENST00000495522 NESP48681 1621 aa23.12■■□□□ 1.29
CALD1-222ENST00000495522 ARHGAP35Q9NRY4 1499 aa23.1■■□□□ 1.29
CALD1-222ENST00000495522 DNMBPQ6XZF7 1577 aa23.09■■□□□ 1.29
CALD1-222ENST00000495522 LAMC3Q9Y6N6 1575 aa23.08■■□□□ 1.28
CALD1-222ENST00000495522 CARMIL1Q5VZK9 1371 aa23.07■■□□□ 1.28
CALD1-222ENST00000495522 TOPBP1Q92547 1522 aa23.02■■□□□ 1.27
CALD1-222ENST00000495522 KANK4Q5T7N3 995 aaPredicted RBP22.99■■□□□ 1.27
CALD1-222ENST00000495522 ABCA10Q8WWZ4 1543 aa22.99■■□□□ 1.27
CALD1-222ENST00000495522 POLA1P09884 1462 aaPredicted RBP22.97■■□□□ 1.27
CALD1-222ENST00000495522 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
CALD1-222ENST00000495522 RRBP1Q9P2E9 1410 aaKnown RBP22.92■■□□□ 1.26
CALD1-222ENST00000495522 PDS5BQ9NTI5 1447 aa22.91■■□□□ 1.26
CALD1-222ENST00000495522 MAP3K1Q13233 1512 aa22.89■■□□□ 1.25
CALD1-222ENST00000495522 CUL7Q14999 1698 aa22.87■■□□□ 1.25
CALD1-222ENST00000495522 DIEXFQ68CQ4 756 aaKnown RBP22.86■■□□□ 1.25
CALD1-222ENST00000495522 KIF21AQ7Z4S6 1674 aa22.85■■□□□ 1.25
CALD1-222ENST00000495522 URB2Q14146 1524 aaKnown RBP22.85■■□□□ 1.25
CALD1-222ENST00000495522 TIAM1Q13009 1591 aa22.84■■□□□ 1.25
CALD1-222ENST00000495522 WDR97A6NE52 1622 aa22.82■■□□□ 1.24
CALD1-222ENST00000495522 FHAD1B1AJZ9 1412 aa22.82■■□□□ 1.24
CALD1-222ENST00000495522 MYT1Q01538 1121 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 222.8 ms