RNA–Protein interactions for RNA: ENST00000419654.6

SEC24D-202, Transcript of SEC24 homolog D, COPII coat complex component, humanhuman

TSL 5 BASIC

Gene SEC24D, Length 2,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC24D-202ENST00000419654 NISCHQ9Y2I1 1504 aa33.6■■■□□ 2.97
SEC24D-202ENST00000419654 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.27
SEC24D-202ENST00000419654 ZCCHC6Q5VYS8 1495 aaKnown RBP28.27■■■□□ 2.12
SEC24D-202ENST00000419654 DCAF1Q9Y4B6 1507 aa27.79■■■□□ 2.04
SEC24D-202ENST00000419654 DCAF8L2P0C7V8 631 aa27.62■■■□□ 2.01
SEC24D-202ENST00000419654 SHROOM4Q9ULL8 1493 aa27.52■■■□□ 2
SEC24D-202ENST00000419654 ABCC9O60706 1549 aa27.42■■□□□ 1.98
SEC24D-202ENST00000419654 MYO15BQ96JP2 1530 aa27.39■■□□□ 1.98
SEC24D-202ENST00000419654 NACADO15069 1562 aa27.15■■□□□ 1.94
SEC24D-202ENST00000419654 SCRIBQ14160 1630 aa26.88■■□□□ 1.89
SEC24D-202ENST00000419654 RB1CC1Q8TDY2 1594 aa26.86■■□□□ 1.89
SEC24D-202ENST00000419654 SUPT5HO00267 1087 aaKnown RBP26.64■■□□□ 1.86
SEC24D-202ENST00000419654 UNC13AQ9UPW8 1703 aa26.38■■□□□ 1.81
SEC24D-202ENST00000419654 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
SEC24D-202ENST00000419654 CECR2Q9BXF3 1484 aa26.1■■□□□ 1.77
SEC24D-202ENST00000419654 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
SEC24D-202ENST00000419654 MROH2BQ7Z745 1585 aa25.98■■□□□ 1.75
SEC24D-202ENST00000419654 BAZ1AQ9NRL2 1556 aaPredicted RBP25.91■■□□□ 1.74
SEC24D-202ENST00000419654 PABPN1Q86U42 306 aaKnown RBP eCLIP25.9■■□□□ 1.74
SEC24D-202ENST00000419654 SMARCA4P51532 1647 aa25.79■■□□□ 1.72
SEC24D-202ENST00000419654 WIZO95785 1651 aa25.77■■□□□ 1.72
SEC24D-202ENST00000419654 CHIC1Q5VXU3 224 aa25.67■■□□□ 1.7
SEC24D-202ENST00000419654 TOP2AP11388 1531 aaKnown RBP25.5■■□□□ 1.67
SEC24D-202ENST00000419654 PEG3Q9GZU2 1588 aa25.49■■□□□ 1.67
SEC24D-202ENST00000419654 ATAD2BQ9ULI0 1458 aa25.32■■□□□ 1.64
SEC24D-202ENST00000419654 SMARCA2P51531 1590 aa25.29■■□□□ 1.64
SEC24D-202ENST00000419654 EIF4G1Q04637 1599 aaKnown RBP25.26■■□□□ 1.63
SEC24D-202ENST00000419654 CCDC88BA6NC98 1476 aa25.25■■□□□ 1.63
SEC24D-202ENST00000419654 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
SEC24D-202ENST00000419654 LOC105371045A0A1W2PR82 267 aa25.14■■□□□ 1.62
SEC24D-202ENST00000419654 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
SEC24D-202ENST00000419654 NCAPD3P42695 1498 aa25.06■■□□□ 1.6
SEC24D-202ENST00000419654 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
SEC24D-202ENST00000419654 TRIM41Q8WV44 630 aa24.96■■□□□ 1.59
SEC24D-202ENST00000419654 HRCP23327 699 aa24.87■■□□□ 1.57
SEC24D-202ENST00000419654 CC2D2AQ9P2K1 1620 aa24.84■■□□□ 1.57
SEC24D-202ENST00000419654 ABCC8Q09428 1581 aa24.78■■□□□ 1.56
SEC24D-202ENST00000419654 EHMT2Q96KQ7 1210 aa24.71■■□□□ 1.55
SEC24D-202ENST00000419654 FAM9AQ8IZU1 332 aaPredicted RBP24.71■■□□□ 1.55
SEC24D-202ENST00000419654 PPARGC1BQ86YN6 1023 aaKnown RBP24.68■■□□□ 1.54
SEC24D-202ENST00000419654 WRNQ14191 1432 aaPredicted RBP eCLIP24.58■■□□□ 1.53
SEC24D-202ENST00000419654 CFTRP13569 1480 aa24.57■■□□□ 1.52
SEC24D-202ENST00000419654 SYNJ1O43426 1573 aa24.5■■□□□ 1.51
SEC24D-202ENST00000419654 PRDM2Q13029 1718 aa24.46■■□□□ 1.51
SEC24D-202ENST00000419654 CADPSQ9ULU8 1353 aa24.43■■□□□ 1.5
SEC24D-202ENST00000419654 TOP2BQ02880 1626 aa24.38■■□□□ 1.49
SEC24D-202ENST00000419654 TRIM26Q12899 539 aaPredicted RBP24.36■■□□□ 1.49
SEC24D-202ENST00000419654 BIVM-ERCC5R4GMW8 1640 aa24.36■■□□□ 1.49
SEC24D-202ENST00000419654 SOGA1O94964 1423 aa24.36■■□□□ 1.49
SEC24D-202ENST00000419654 EEA1Q15075 1411 aa24.32■■□□□ 1.48
SEC24D-202ENST00000419654 CUX1P39880 1505 aa24.27■■□□□ 1.48
SEC24D-202ENST00000419654 RUSC2Q8N2Y8 1516 aa24.26■■□□□ 1.47
SEC24D-202ENST00000419654 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
SEC24D-202ENST00000419654 CSRNP3Q8WYN3 585 aa24.18■■□□□ 1.46
SEC24D-202ENST00000419654 LAMC3Q9Y6N6 1575 aa24.17■■□□□ 1.46
SEC24D-202ENST00000419654 NESP48681 1621 aa24.16■■□□□ 1.46
SEC24D-202ENST00000419654 FANCD2Q9BXW9 1451 aa24.16■■□□□ 1.46
SEC24D-202ENST00000419654 KIF21BO75037 1637 aa24.02■■□□□ 1.44
SEC24D-202ENST00000419654 GOLGA3Q08378 1498 aa24■■□□□ 1.43
SEC24D-202ENST00000419654 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
SEC24D-202ENST00000419654 DNMBPQ6XZF7 1577 aa23.98■■□□□ 1.43
SEC24D-202ENST00000419654 TNIKQ9UKE5 1360 aa23.98■■□□□ 1.43
SEC24D-202ENST00000419654 FGD5Q6ZNL6 1462 aa23.96■■□□□ 1.43
SEC24D-202ENST00000419654 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
SEC24D-202ENST00000419654 KIF27Q86VH2 1401 aa23.93■■□□□ 1.42
SEC24D-202ENST00000419654 TOPBP1Q92547 1522 aa23.92■■□□□ 1.42
SEC24D-202ENST00000419654 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
SEC24D-202ENST00000419654 TTBK1Q5TCY1 1321 aaPredicted RBP23.87■■□□□ 1.41
SEC24D-202ENST00000419654 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
SEC24D-202ENST00000419654 CEP162Q5TB80 1403 aa23.86■■□□□ 1.41
SEC24D-202ENST00000419654 PRXQ9BXM0 1461 aa23.86■■□□□ 1.41
SEC24D-202ENST00000419654 UBTFP17480 764 aaKnown RBP23.86■■□□□ 1.41
SEC24D-202ENST00000419654 RAPGEF2Q9Y4G8 1499 aa23.85■■□□□ 1.41
SEC24D-202ENST00000419654 CUX2O14529 1486 aa23.83■■□□□ 1.41
SEC24D-202ENST00000419654 POLA1P09884 1462 aaPredicted RBP23.83■■□□□ 1.41
SEC24D-202ENST00000419654 ERICH3Q5RHP9 1530 aa23.82■■□□□ 1.4
SEC24D-202ENST00000419654 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
SEC24D-202ENST00000419654 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
SEC24D-202ENST00000419654 IGF1RP08069 1367 aa23.73■■□□□ 1.39
SEC24D-202ENST00000419654 WDR97A6NE52 1622 aa23.69■■□□□ 1.38
SEC24D-202ENST00000419654 ZEB1P37275 1124 aaPredicted RBP23.68■■□□□ 1.38
SEC24D-202ENST00000419654 MRC2Q9UBG0 1479 aa23.65■■□□□ 1.38
SEC24D-202ENST00000419654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.64■■□□□ 1.38
SEC24D-202ENST00000419654 CLIP1P30622 1438 aa23.62■■□□□ 1.37
SEC24D-202ENST00000419654 CARMIL1Q5VZK9 1371 aa23.59■■□□□ 1.37
SEC24D-202ENST00000419654 TARBP1Q13395 1621 aaKnown RBP23.57■■□□□ 1.36
SEC24D-202ENST00000419654 ABCA5Q8WWZ7 1642 aa23.57■■□□□ 1.36
SEC24D-202ENST00000419654 WDR62O43379 1518 aa23.54■■□□□ 1.36
SEC24D-202ENST00000419654 CUL7Q14999 1698 aa23.52■■□□□ 1.36
SEC24D-202ENST00000419654 CCER1Q8TC90 406 aaPredicted RBP23.49■■□□□ 1.35
SEC24D-202ENST00000419654 TDRD9Q8NDG6 1382 aaKnown RBP23.49■■□□□ 1.35
SEC24D-202ENST00000419654 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
SEC24D-202ENST00000419654 ERCC6Q03468 1493 aa23.47■■□□□ 1.35
SEC24D-202ENST00000419654 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.34
SEC24D-202ENST00000419654 THOC2Q8NI27 1593 aaKnown RBP23.43■■□□□ 1.34
SEC24D-202ENST00000419654 RANGAP1P46060 587 aaPredicted RBP23.4■■□□□ 1.34
SEC24D-202ENST00000419654 ARAP1Q96P48 1450 aa23.39■■□□□ 1.34
SEC24D-202ENST00000419654 IFT140Q96RY7 1462 aa23.39■■□□□ 1.34
SEC24D-202ENST00000419654 ARHGAP35Q9NRY4 1499 aa23.35■■□□□ 1.33
SEC24D-202ENST00000419654 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms