RNA–Protein interactions for RNA: ENST00000396653.2

AP1S3-202, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 4 BASIC

Gene AP1S3, Length 589 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-202ENST00000396653 NISCHQ9Y2I1 1504 aa39.37■■■■□ 3.89
AP1S3-202ENST00000396653 CCDC180Q9P1Z9 1646 aa34.96■■■■□ 3.19
AP1S3-202ENST00000396653 ABCC9O60706 1549 aa33.62■■■□□ 2.97
AP1S3-202ENST00000396653 ZCCHC6Q5VYS8 1495 aaKnown RBP32.92■■■□□ 2.86
AP1S3-202ENST00000396653 NACADO15069 1562 aa32.7■■■□□ 2.83
AP1S3-202ENST00000396653 MYO15BQ96JP2 1530 aa32.69■■■□□ 2.82
AP1S3-202ENST00000396653 DCAF1Q9Y4B6 1507 aa32.67■■■□□ 2.82
AP1S3-202ENST00000396653 RB1CC1Q8TDY2 1594 aa32.63■■■□□ 2.81
AP1S3-202ENST00000396653 DCAF8L2P0C7V8 631 aa32.49■■■□□ 2.79
AP1S3-202ENST00000396653 UNC13AQ9UPW8 1703 aa31.95■■■□□ 2.71
AP1S3-202ENST00000396653 SCRIBQ14160 1630 aa31.79■■■□□ 2.68
AP1S3-202ENST00000396653 BICRAQ9NZM4 1560 aa31.61■■■□□ 2.65
AP1S3-202ENST00000396653 SHROOM4Q9ULL8 1493 aa31.42■■■□□ 2.62
AP1S3-202ENST00000396653 PABPN1Q86U42 306 aaKnown RBP eCLIP31.38■■■□□ 2.61
AP1S3-202ENST00000396653 EIF4G1Q04637 1599 aaKnown RBP30.75■■■□□ 2.51
AP1S3-202ENST00000396653 CECR2Q9BXF3 1484 aa30.56■■■□□ 2.48
AP1S3-202ENST00000396653 BAZ1AQ9NRL2 1556 aaPredicted RBP30.52■■■□□ 2.48
AP1S3-202ENST00000396653 CC2D2AQ9P2K1 1620 aa30.51■■■□□ 2.47
AP1S3-202ENST00000396653 SMARCA4P51532 1647 aa30.5■■■□□ 2.47
AP1S3-202ENST00000396653 DNAJC5BQ9UF47 199 aa30.4■■■□□ 2.46
AP1S3-202ENST00000396653 MROH2BQ7Z745 1585 aa30.31■■■□□ 2.44
AP1S3-202ENST00000396653 PEG3Q9GZU2 1588 aa30.24■■■□□ 2.43
AP1S3-202ENST00000396653 SMARCA2P51531 1590 aa30.23■■■□□ 2.43
AP1S3-202ENST00000396653 ATAD2BQ9ULI0 1458 aa30.18■■■□□ 2.42
AP1S3-202ENST00000396653 NCAPD3P42695 1498 aa30.12■■■□□ 2.41
AP1S3-202ENST00000396653 RSF1Q96T23 1441 aaPredicted RBP30.09■■■□□ 2.41
AP1S3-202ENST00000396653 HMGXB3Q12766 1538 aa30.08■■■□□ 2.41
AP1S3-202ENST00000396653 WIZO95785 1651 aa30.03■■■□□ 2.4
AP1S3-202ENST00000396653 BAZ1BQ9UIG0 1483 aaKnown RBP29.96■■■□□ 2.39
AP1S3-202ENST00000396653 TOP2AP11388 1531 aaKnown RBP29.78■■■□□ 2.36
AP1S3-202ENST00000396653 SUPT5HO00267 1087 aaKnown RBP29.48■■■□□ 2.31
AP1S3-202ENST00000396653 CCDC88BA6NC98 1476 aa29.35■■■□□ 2.29
AP1S3-202ENST00000396653 LAMC3Q9Y6N6 1575 aa29.32■■■□□ 2.28
AP1S3-202ENST00000396653 CADPSQ9ULU8 1353 aa29.23■■■□□ 2.27
AP1S3-202ENST00000396653 NESP48681 1621 aa29.2■■■□□ 2.27
AP1S3-202ENST00000396653 CFTRP13569 1480 aa29.17■■■□□ 2.26
AP1S3-202ENST00000396653 PRDM2Q13029 1718 aa29.14■■■□□ 2.26
AP1S3-202ENST00000396653 PDS5BQ9NTI5 1447 aa29.03■■■□□ 2.24
AP1S3-202ENST00000396653 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
AP1S3-202ENST00000396653 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
AP1S3-202ENST00000396653 FANCD2Q9BXW9 1451 aa28.91■■■□□ 2.22
AP1S3-202ENST00000396653 CEP164Q9UPV0 1460 aa28.86■■■□□ 2.21
AP1S3-202ENST00000396653 THOC2Q8NI27 1593 aaKnown RBP28.8■■■□□ 2.2
AP1S3-202ENST00000396653 MRC2Q9UBG0 1479 aa28.74■■■□□ 2.19
AP1S3-202ENST00000396653 WDR62O43379 1518 aa28.67■■■□□ 2.18
AP1S3-202ENST00000396653 CUX2O14529 1486 aa28.6■■■□□ 2.17
AP1S3-202ENST00000396653 URB2Q14146 1524 aaKnown RBP28.59■■■□□ 2.17
AP1S3-202ENST00000396653 ABCC8Q09428 1581 aa28.57■■■□□ 2.16
AP1S3-202ENST00000396653 DNMBPQ6XZF7 1577 aa28.55■■■□□ 2.16
AP1S3-202ENST00000396653 TOPBP1Q92547 1522 aa28.51■■■□□ 2.15
AP1S3-202ENST00000396653 CUX1P39880 1505 aa28.43■■■□□ 2.14
AP1S3-202ENST00000396653 WRNQ14191 1432 aaPredicted RBP eCLIP28.38■■■□□ 2.13
AP1S3-202ENST00000396653 BIVM-ERCC5R4GMW8 1640 aa28.37■■■□□ 2.13
AP1S3-202ENST00000396653 TOP2BQ02880 1626 aa28.34■■■□□ 2.13
AP1S3-202ENST00000396653 SYNJ1O43426 1573 aa28.32■■■□□ 2.12
AP1S3-202ENST00000396653 POLA1P09884 1462 aaPredicted RBP28.28■■■□□ 2.12
AP1S3-202ENST00000396653 FGD5Q6ZNL6 1462 aa28.27■■■□□ 2.12
AP1S3-202ENST00000396653 IFT140Q96RY7 1462 aa28.25■■■□□ 2.11
AP1S3-202ENST00000396653 TARBP1Q13395 1621 aaKnown RBP28.2■■■□□ 2.1
AP1S3-202ENST00000396653 SOGA1O94964 1423 aa28.13■■■□□ 2.09
AP1S3-202ENST00000396653 WDR97A6NE52 1622 aa28.13■■■□□ 2.09
AP1S3-202ENST00000396653 RAD54L2Q9Y4B4 1467 aa28.09■■■□□ 2.09
AP1S3-202ENST00000396653 ABCA10Q8WWZ4 1543 aa28.05■■■□□ 2.08
AP1S3-202ENST00000396653 EIF4G3O43432 1585 aaKnown RBP28.02■■■□□ 2.08
AP1S3-202ENST00000396653 ZNF608Q9ULD9 1512 aaPredicted RBP28.02■■■□□ 2.08
AP1S3-202ENST00000396653 ABCA5Q8WWZ7 1642 aa27.94■■■□□ 2.06
AP1S3-202ENST00000396653 AQRO60306 1485 aaKnown RBP eCLIP27.88■■■□□ 2.05
AP1S3-202ENST00000396653 TDRD9Q8NDG6 1382 aaKnown RBP27.87■■■□□ 2.05
AP1S3-202ENST00000396653 TRIM41Q8WV44 630 aa27.87■■■□□ 2.05
AP1S3-202ENST00000396653 PBRM1Q86U86 1689 aa27.86■■■□□ 2.05
AP1S3-202ENST00000396653 GAPVD1Q14C86 1478 aa27.84■■■□□ 2.05
AP1S3-202ENST00000396653 GRIN2BQ13224 1484 aa27.81■■■□□ 2.04
AP1S3-202ENST00000396653 CHIC1Q5VXU3 224 aa27.8■■■□□ 2.04
AP1S3-202ENST00000396653 KIF27Q86VH2 1401 aa27.76■■■□□ 2.04
AP1S3-202ENST00000396653 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
AP1S3-202ENST00000396653 MAGI1Q96QZ7 1491 aaPredicted RBP27.73■■■□□ 2.03
AP1S3-202ENST00000396653 SNAPC4Q5SXM2 1469 aa27.7■■■□□ 2.02
AP1S3-202ENST00000396653 ADAMTS12P58397 1594 aa27.64■■■□□ 2.01
AP1S3-202ENST00000396653 CUL7Q14999 1698 aa27.61■■■□□ 2.01
AP1S3-202ENST00000396653 CHD1O14646 1710 aa27.61■■■□□ 2.01
AP1S3-202ENST00000396653 SYNJ2O15056 1496 aa27.58■■■□□ 2.01
AP1S3-202ENST00000396653 RUSC2Q8N2Y8 1516 aa27.56■■■□□ 2
AP1S3-202ENST00000396653 IGF1RP08069 1367 aa27.55■■■□□ 2
AP1S3-202ENST00000396653 FHAD1B1AJZ9 1412 aa27.55■■■□□ 2
AP1S3-202ENST00000396653 EEA1Q15075 1411 aa27.55■■■□□ 2
AP1S3-202ENST00000396653 GRIN2AQ12879 1464 aa27.45■■□□□ 1.99
AP1S3-202ENST00000396653 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
AP1S3-202ENST00000396653 CARMIL1Q5VZK9 1371 aa27.41■■□□□ 1.98
AP1S3-202ENST00000396653 FBLN2P98095 1184 aa27.39■■□□□ 1.98
AP1S3-202ENST00000396653 OSCARQ8IYS5 282 aa27.36■■□□□ 1.97
AP1S3-202ENST00000396653 PRXQ9BXM0 1461 aa27.34■■□□□ 1.97
AP1S3-202ENST00000396653 NUP160Q12769 1436 aa27.33■■□□□ 1.96
AP1S3-202ENST00000396653 RAPGEF2Q9Y4G8 1499 aa27.32■■□□□ 1.96
AP1S3-202ENST00000396653 CSRNP3Q8WYN3 585 aa27.32■■□□□ 1.96
AP1S3-202ENST00000396653 CEP170Q5SW79 1584 aa27.31■■□□□ 1.96
AP1S3-202ENST00000396653 CLASP1Q7Z460 1538 aa27.31■■□□□ 1.96
AP1S3-202ENST00000396653 KIF21BO75037 1637 aa27.25■■□□□ 1.95
AP1S3-202ENST00000396653 FAM9AQ8IZU1 332 aaPredicted RBP27.21■■□□□ 1.95
AP1S3-202ENST00000396653 CTTNBP2Q8WZ74 1663 aa27.16■■□□□ 1.94
AP1S3-202ENST00000396653 KIAA0586Q9BVV6 1533 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms