RNA–Protein interactions for RNA: ENST00000488353.2

RER1-207, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RER1, Length 2,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-207ENST00000488353 NISCHQ9Y2I1 1504 aa29.38■■■□□ 2.29
RER1-207ENST00000488353 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
RER1-207ENST00000488353 ZCCHC6Q5VYS8 1495 aaKnown RBP24.76■■□□□ 1.55
RER1-207ENST00000488353 SHROOM4Q9ULL8 1493 aa24.75■■□□□ 1.55
RER1-207ENST00000488353 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
RER1-207ENST00000488353 SUPT5HO00267 1087 aaKnown RBP24.17■■□□□ 1.46
RER1-207ENST00000488353 DCAF1Q9Y4B6 1507 aa24.09■■□□□ 1.45
RER1-207ENST00000488353 HRCP23327 699 aa23.83■■□□□ 1.41
RER1-207ENST00000488353 ABCC9O60706 1549 aa23.74■■□□□ 1.39
RER1-207ENST00000488353 MYO15BQ96JP2 1530 aa23.56■■□□□ 1.36
RER1-207ENST00000488353 SCRIBQ14160 1630 aa23.55■■□□□ 1.36
RER1-207ENST00000488353 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
RER1-207ENST00000488353 NACADO15069 1562 aa23.39■■□□□ 1.33
RER1-207ENST00000488353 PCGF6Q9BYE7 350 aa23.27■■□□□ 1.32
RER1-207ENST00000488353 PPARGC1BQ86YN6 1023 aaKnown RBP23.17■■□□□ 1.3
RER1-207ENST00000488353 RB1CC1Q8TDY2 1594 aa23.11■■□□□ 1.29
RER1-207ENST00000488353 PELP1Q8IZL8 1130 aaKnown RBP23.09■■□□□ 1.29
RER1-207ENST00000488353 RSF1Q96T23 1441 aaPredicted RBP23.08■■□□□ 1.29
RER1-207ENST00000488353 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
RER1-207ENST00000488353 LOC105371045A0A1W2PR82 267 aa22.88■■□□□ 1.25
RER1-207ENST00000488353 MROH2BQ7Z745 1585 aa22.83■■□□□ 1.24
RER1-207ENST00000488353 UNC13AQ9UPW8 1703 aa22.76■■□□□ 1.23
RER1-207ENST00000488353 WIZO95785 1651 aa22.68■■□□□ 1.22
RER1-207ENST00000488353 TRIM26Q12899 539 aaPredicted RBP22.66■■□□□ 1.22
RER1-207ENST00000488353 PABPN1Q86U42 306 aaKnown RBP eCLIP22.61■■□□□ 1.21
RER1-207ENST00000488353 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
RER1-207ENST00000488353 ZEB1P37275 1124 aaPredicted RBP22.55■■□□□ 1.2
RER1-207ENST00000488353 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
RER1-207ENST00000488353 SMARCA4P51532 1647 aa22.47■■□□□ 1.19
RER1-207ENST00000488353 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
RER1-207ENST00000488353 TRIM41Q8WV44 630 aa22.43■■□□□ 1.18
RER1-207ENST00000488353 FAM9AQ8IZU1 332 aaPredicted RBP22.37■■□□□ 1.17
RER1-207ENST00000488353 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
RER1-207ENST00000488353 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
RER1-207ENST00000488353 MYT1Q01538 1121 aa22.24■■□□□ 1.15
RER1-207ENST00000488353 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
RER1-207ENST00000488353 SMARCA2P51531 1590 aa22.18■■□□□ 1.14
RER1-207ENST00000488353 EIF4G1Q04637 1599 aaKnown RBP22.17■■□□□ 1.14
RER1-207ENST00000488353 PEG3Q9GZU2 1588 aa22.05■■□□□ 1.12
RER1-207ENST00000488353 ABCC8Q09428 1581 aa22.02■■□□□ 1.12
RER1-207ENST00000488353 ATAD2BQ9ULI0 1458 aa22■■□□□ 1.11
RER1-207ENST00000488353 ACIN1Q9UKV3 1341 aaKnown RBP21.99■■□□□ 1.11
RER1-207ENST00000488353 BAZ1BQ9UIG0 1483 aaKnown RBP21.93■■□□□ 1.1
RER1-207ENST00000488353 NEUROD1Q13562 356 aa21.86■■□□□ 1.09
RER1-207ENST00000488353 CENPBP07199 599 aaPredicted RBP21.78■■□□□ 1.08
RER1-207ENST00000488353 GTF3C3Q9Y5Q9 886 aa21.76■■□□□ 1.07
RER1-207ENST00000488353 SOGA1O94964 1423 aa21.72■■□□□ 1.07
RER1-207ENST00000488353 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.064e-8■■■■■ 27.9
RER1-207ENST00000488353 NCAPD3P42695 1498 aa21.65■■□□□ 1.06
RER1-207ENST00000488353 RUSC2Q8N2Y8 1516 aa21.64■■□□□ 1.05
RER1-207ENST00000488353 DIEXFQ68CQ4 756 aaKnown RBP21.63■■□□□ 1.05
RER1-207ENST00000488353 SYNJ1O43426 1573 aa21.61■■□□□ 1.05
RER1-207ENST00000488353 HMGXB3Q12766 1538 aa21.61■■□□□ 1.05
RER1-207ENST00000488353 CCER1Q8TC90 406 aaPredicted RBP21.59■■□□□ 1.05
RER1-207ENST00000488353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.57■■□□□ 1.04
RER1-207ENST00000488353 TTBK1Q5TCY1 1321 aaPredicted RBP21.56■■□□□ 1.04
RER1-207ENST00000488353 CSRNP3Q8WYN3 585 aa21.54■■□□□ 1.04
RER1-207ENST00000488353 EEA1Q15075 1411 aa21.49■■□□□ 1.03
RER1-207ENST00000488353 UBTFP17480 764 aaKnown RBP21.43■■□□□ 1.02
RER1-207ENST00000488353 CEP162Q5TB80 1403 aa21.42■■□□□ 1.02
RER1-207ENST00000488353 TNIKQ9UKE5 1360 aa21.38■■□□□ 1.01
RER1-207ENST00000488353 TOP2BQ02880 1626 aa21.37■■□□□ 1.01
RER1-207ENST00000488353 CC2D2AQ9P2K1 1620 aa21.36■■□□□ 1.01
RER1-207ENST00000488353 CFTRP13569 1480 aa21.35■■□□□ 1.01
RER1-207ENST00000488353 GOLGA3Q08378 1498 aa21.35■■□□□ 1.01
RER1-207ENST00000488353 BIVM-ERCC5R4GMW8 1640 aa21.3■■□□□ 1
RER1-207ENST00000488353 CUX1P39880 1505 aa21.28■■□□□ 1
RER1-207ENST00000488353 CEP164Q9UPV0 1460 aa21.28■■□□□ 1
RER1-207ENST00000488353 ZNF316A6NFI3 1004 aaPredicted RBP21.24■□□□□ 0.99
RER1-207ENST00000488353 KIF21BO75037 1637 aa21.24■□□□□ 0.99
RER1-207ENST00000488353 RAPGEF2Q9Y4G8 1499 aa21.21■□□□□ 0.99
RER1-207ENST00000488353 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.99
RER1-207ENST00000488353 RANGAP1P46060 587 aaPredicted RBP21.15■□□□□ 0.98
RER1-207ENST00000488353 PRDM2Q13029 1718 aa21.14■□□□□ 0.97
RER1-207ENST00000488353 YTHDC1Q96MU7 727 aaKnown RBP21.14■□□□□ 0.97
RER1-207ENST00000488353 CLIP1P30622 1438 aa21.1■□□□□ 0.97
RER1-207ENST00000488353 KIF27Q86VH2 1401 aa21.06■□□□□ 0.96
RER1-207ENST00000488353 PRXQ9BXM0 1461 aa21.04■□□□□ 0.96
RER1-207ENST00000488353 HNRNPUL2Q1KMD3 747 aaKnown RBP21.02■□□□□ 0.96
RER1-207ENST00000488353 MIER1Q8N108 512 aa21.02■□□□□ 0.96
RER1-207ENST00000488353 NESP48681 1621 aa21.02■□□□□ 0.96
RER1-207ENST00000488353 FANCD2Q9BXW9 1451 aa21.01■□□□□ 0.95
RER1-207ENST00000488353 DNAJC5BQ9UF47 199 aa20.98■□□□□ 0.95
RER1-207ENST00000488353 ERICH3Q5RHP9 1530 aa20.98■□□□□ 0.95
RER1-207ENST00000488353 FGD5Q6ZNL6 1462 aa20.97■□□□□ 0.95
RER1-207ENST00000488353 CUX2O14529 1486 aa20.97■□□□□ 0.95
RER1-207ENST00000488353 VPS8Q8N3P4 1428 aa20.94■□□□□ 0.94
RER1-207ENST00000488353 APLP2Q06481 763 aa20.91■□□□□ 0.94
RER1-207ENST00000488353 CLSPNQ9HAW4 1339 aa20.91■□□□□ 0.94
RER1-207ENST00000488353 IGF1RP08069 1367 aa20.87■□□□□ 0.93
RER1-207ENST00000488353 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.92
RER1-207ENST00000488353 DNMBPQ6XZF7 1577 aa20.82■□□□□ 0.92
RER1-207ENST00000488353 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
RER1-207ENST00000488353 ARAP1Q96P48 1450 aa20.81■□□□□ 0.92
RER1-207ENST00000488353 LAMC3Q9Y6N6 1575 aa20.79■□□□□ 0.92
RER1-207ENST00000488353 POLA1P09884 1462 aaPredicted RBP20.79■□□□□ 0.92
RER1-207ENST00000488353 CARMIL1Q5VZK9 1371 aa20.78■□□□□ 0.92
RER1-207ENST00000488353 SUPT16HQ9Y5B9 1047 aaKnown RBP20.75■□□□□ 0.91
RER1-207ENST00000488353 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
RER1-207ENST00000488353 ANP32EQ9BTT0 268 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms