RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
USH1C-207ENST00000527720 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
USH1C-207ENST00000527720 ZCCHC6Q5VYS8 1495 aaKnown RBP27.83■■■□□ 2.05
USH1C-207ENST00000527720 SHROOM4Q9ULL8 1493 aa27.38■■□□□ 1.97
USH1C-207ENST00000527720 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
USH1C-207ENST00000527720 DCAF8L2P0C7V8 631 aa26.91■■□□□ 1.9
USH1C-207ENST00000527720 SUPT5HO00267 1087 aaKnown RBP26.73■■□□□ 1.87
USH1C-207ENST00000527720 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
USH1C-207ENST00000527720 NACADO15069 1562 aa26.24■■□□□ 1.79
USH1C-207ENST00000527720 ABCC9O60706 1549 aa26.21■■□□□ 1.79
USH1C-207ENST00000527720 SCRIBQ14160 1630 aa26.2■■□□□ 1.79
USH1C-207ENST00000527720 CHIC1Q5VXU3 224 aa26■■□□□ 1.75
USH1C-207ENST00000527720 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
USH1C-207ENST00000527720 RSF1Q96T23 1441 aaPredicted RBP25.83■■□□□ 1.73
USH1C-207ENST00000527720 CECR2Q9BXF3 1484 aa25.52■■□□□ 1.68
USH1C-207ENST00000527720 MROH2BQ7Z745 1585 aa25.47■■□□□ 1.67
USH1C-207ENST00000527720 UNC13AQ9UPW8 1703 aa25.45■■□□□ 1.66
USH1C-207ENST00000527720 BAZ1AQ9NRL2 1556 aaPredicted RBP25.38■■□□□ 1.65
USH1C-207ENST00000527720 WIZO95785 1651 aa25.34■■□□□ 1.65
USH1C-207ENST00000527720 SMARCA4P51532 1647 aa25.18■■□□□ 1.62
USH1C-207ENST00000527720 TRIM41Q8WV44 630 aa25.08■■□□□ 1.61
USH1C-207ENST00000527720 TOP2AP11388 1531 aaKnown RBP25.07■■□□□ 1.6
USH1C-207ENST00000527720 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
USH1C-207ENST00000527720 LOC105371045A0A1W2PR82 267 aa25.03■■□□□ 1.6
USH1C-207ENST00000527720 EIF4G1Q04637 1599 aaKnown RBP25■■□□□ 1.59
USH1C-207ENST00000527720 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
USH1C-207ENST00000527720 PEG3Q9GZU2 1588 aa24.84■■□□□ 1.57
USH1C-207ENST00000527720 CCDC88BA6NC98 1476 aa24.82■■□□□ 1.56
USH1C-207ENST00000527720 PABPN1Q86U42 306 aaKnown RBP eCLIP24.76■■□□□ 1.55
USH1C-207ENST00000527720 PCGF6Q9BYE7 350 aa24.71■■□□□ 1.55
USH1C-207ENST00000527720 HRCP23327 699 aa24.64■■□□□ 1.54
USH1C-207ENST00000527720 FAM9AQ8IZU1 332 aaPredicted RBP24.63■■□□□ 1.53
USH1C-207ENST00000527720 ABCC8Q09428 1581 aa24.57■■□□□ 1.52
USH1C-207ENST00000527720 ATAD2BQ9ULI0 1458 aa24.54■■□□□ 1.52
USH1C-207ENST00000527720 TRIM26Q12899 539 aaPredicted RBP24.54■■□□□ 1.52
USH1C-207ENST00000527720 BAZ1BQ9UIG0 1483 aaKnown RBP24.45■■□□□ 1.5
USH1C-207ENST00000527720 EEA1Q15075 1411 aa24.37■■□□□ 1.49
USH1C-207ENST00000527720 WRNQ14191 1432 aaPredicted RBP eCLIP24.3■■□□□ 1.48
USH1C-207ENST00000527720 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
USH1C-207ENST00000527720 EHMT2Q96KQ7 1210 aa24.24■■□□□ 1.47
USH1C-207ENST00000527720 SOGA1O94964 1423 aa24.23■■□□□ 1.47
USH1C-207ENST00000527720 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
USH1C-207ENST00000527720 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
USH1C-207ENST00000527720 TNIKQ9UKE5 1360 aa24.13■■□□□ 1.45
USH1C-207ENST00000527720 CSRNP3Q8WYN3 585 aa24.13■■□□□ 1.45
USH1C-207ENST00000527720 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
USH1C-207ENST00000527720 GOLGA3Q08378 1498 aa24.06■■□□□ 1.44
USH1C-207ENST00000527720 CEP162Q5TB80 1403 aa24.06■■□□□ 1.44
USH1C-207ENST00000527720 TOP2BQ02880 1626 aa24.04■■□□□ 1.44
USH1C-207ENST00000527720 KIF21BO75037 1637 aa24.04■■□□□ 1.44
USH1C-207ENST00000527720 BIVM-ERCC5R4GMW8 1640 aa24.03■■□□□ 1.44
USH1C-207ENST00000527720 CEP164Q9UPV0 1460 aa23.99■■□□□ 1.43
USH1C-207ENST00000527720 ZEB1P37275 1124 aaPredicted RBP23.98■■□□□ 1.43
USH1C-207ENST00000527720 PRDM2Q13029 1718 aa23.92■■□□□ 1.42
USH1C-207ENST00000527720 PPARGC1BQ86YN6 1023 aaKnown RBP23.92■■□□□ 1.42
USH1C-207ENST00000527720 UBTFP17480 764 aaKnown RBP23.89■■□□□ 1.42
USH1C-207ENST00000527720 CFTRP13569 1480 aa23.88■■□□□ 1.41
USH1C-207ENST00000527720 CUX1P39880 1505 aa23.77■■□□□ 1.4
USH1C-207ENST00000527720 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
USH1C-207ENST00000527720 RAPGEF2Q9Y4G8 1499 aa23.72■■□□□ 1.39
USH1C-207ENST00000527720 CLIP1P30622 1438 aa23.69■■□□□ 1.38
USH1C-207ENST00000527720 CC2D2AQ9P2K1 1620 aa23.69■■□□□ 1.38
USH1C-207ENST00000527720 PRXQ9BXM0 1461 aa23.66■■□□□ 1.38
USH1C-207ENST00000527720 CADPSQ9ULU8 1353 aa23.62■■□□□ 1.37
USH1C-207ENST00000527720 KIF27Q86VH2 1401 aa23.61■■□□□ 1.37
USH1C-207ENST00000527720 VPS8Q8N3P4 1428 aa23.61■■□□□ 1.37
USH1C-207ENST00000527720 TTBK1Q5TCY1 1321 aaPredicted RBP23.43■■□□□ 1.34
USH1C-207ENST00000527720 CCER1Q8TC90 406 aaPredicted RBP23.42■■□□□ 1.34
USH1C-207ENST00000527720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.42■■□□□ 1.34
USH1C-207ENST00000527720 FGD5Q6ZNL6 1462 aa23.38■■□□□ 1.33
USH1C-207ENST00000527720 APLP2Q06481 763 aa23.38■■□□□ 1.33
USH1C-207ENST00000527720 FANCD2Q9BXW9 1451 aa23.38■■□□□ 1.33
USH1C-207ENST00000527720 CUX2O14529 1486 aa23.37■■□□□ 1.33
USH1C-207ENST00000527720 ARAP1Q96P48 1450 aa23.37■■□□□ 1.33
USH1C-207ENST00000527720 DNMBPQ6XZF7 1577 aa23.33■■□□□ 1.33
USH1C-207ENST00000527720 IGF1RP08069 1367 aa23.31■■□□□ 1.32
USH1C-207ENST00000527720 LAMC3Q9Y6N6 1575 aa23.28■■□□□ 1.32
USH1C-207ENST00000527720 RANGAP1P46060 587 aaPredicted RBP23.25■■□□□ 1.31
USH1C-207ENST00000527720 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
USH1C-207ENST00000527720 TOPBP1Q92547 1522 aa23.22■■□□□ 1.31
USH1C-207ENST00000527720 CARMIL1Q5VZK9 1371 aa23.21■■□□□ 1.31
USH1C-207ENST00000527720 ABCA10Q8WWZ4 1543 aa23.21■■□□□ 1.31
USH1C-207ENST00000527720 NESP48681 1621 aa23.18■■□□□ 1.3
USH1C-207ENST00000527720 POLA1P09884 1462 aaPredicted RBP23.16■■□□□ 1.3
USH1C-207ENST00000527720 CUL7Q14999 1698 aa23.13■■□□□ 1.29
USH1C-207ENST00000527720 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
USH1C-207ENST00000527720 MAP3K1Q13233 1512 aa23.09■■□□□ 1.29
USH1C-207ENST00000527720 RAD54L2Q9Y4B4 1467 aa23.08■■□□□ 1.29
USH1C-207ENST00000527720 HNRNPUL2Q1KMD3 747 aaKnown RBP23.08■■□□□ 1.29
USH1C-207ENST00000527720 URB2Q14146 1524 aaKnown RBP23.05■■□□□ 1.28
USH1C-207ENST00000527720 PDS5BQ9NTI5 1447 aa23.04■■□□□ 1.28
USH1C-207ENST00000527720 RRBP1Q9P2E9 1410 aaKnown RBP23.04■■□□□ 1.28
USH1C-207ENST00000527720 KANK4Q5T7N3 995 aaPredicted RBP23.02■■□□□ 1.28
USH1C-207ENST00000527720 CTTNBP2Q8WZ74 1663 aa23.02■■□□□ 1.28
USH1C-207ENST00000527720 TIAM1Q13009 1591 aa23■■□□□ 1.27
USH1C-207ENST00000527720 FHAD1B1AJZ9 1412 aa22.98■■□□□ 1.27
USH1C-207ENST00000527720 ABCA5Q8WWZ7 1642 aa22.98■■□□□ 1.27
USH1C-207ENST00000527720 EFCAB5A4FU69 1503 aa22.98■■□□□ 1.27
USH1C-207ENST00000527720 KIF21AQ7Z4S6 1674 aa22.97■■□□□ 1.27
USH1C-207ENST00000527720 CFAP43Q8NDM7 1665 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms