Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 HYI-210ENST00000486909 905 ntTSL 5 BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 EED-207ENST00000528180 1745 ntTSL 5 BASIC30.89■■■□□ 2.54
SENP3-EIF4A1A0A087X0R7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC30.88■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 KRT18P10-201ENST00000388836 1287 ntBASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.85■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 AC090877.2-201ENST00000558441 1738 ntBASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.84■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC30.83■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.83■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 AC239859.2-201ENST00000444165 318 ntBASIC30.83■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
SENP3-EIF4A1A0A087X0R7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.82■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 LINC00543-201ENST00000567234 1845 ntBASIC30.82■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.78■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.78■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AC120024.1-201ENST00000562672 995 ntBASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 AL031848.2-201ENST00000607670 837 ntBASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.77■■■□□ 2.52
SENP3-EIF4A1A0A087X0R7 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3-EIF4A1A0A087X0R7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.75■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms