Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.96□□□□□ -0.18
LRFN1Q9P244 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.96□□□□□ -0.18
LRFN1Q9P244 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LRFN1Q9P244 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LRFN1Q9P244 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LRFN1Q9P244 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
LRFN1Q9P244 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC104457.1-201ENST00000401024 814 ntBASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 EIF3FP3-201ENST00000434851 1086 ntBASIC13.95□□□□□ -0.18
LRFN1Q9P244 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 Z93015.1-201ENST00000451718 390 ntBASIC13.95□□□□□ -0.18
LRFN1Q9P244 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 MIR4741-201ENST00000579822 90 ntBASIC13.95□□□□□ -0.18
LRFN1Q9P244 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 AC087481.3-201ENST00000602886 1894 ntBASIC13.95□□□□□ -0.18
LRFN1Q9P244 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.95□□□□□ -0.18
LRFN1Q9P244 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LRFN1Q9P244 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 AC055811.4-201ENST00000624039 1754 ntBASIC13.94□□□□□ -0.18
LRFN1Q9P244 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 REXO1L5P-201ENST00000622260 2098 ntBASIC13.94□□□□□ -0.18
LRFN1Q9P244 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LRFN1Q9P244 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 FAM8A4P-201ENST00000435433 1213 ntBASIC13.94□□□□□ -0.18
LRFN1Q9P244 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.94□□□□□ -0.18
LRFN1Q9P244 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms