RNA–Protein interactions for RNA: ENST00000617999.4

UPK1A-204, Transcript of uroplakin 1A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPK1A, Length 1,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1A-204ENST00000617999 NISCHQ9Y2I1 1504 aa36.22■■■■□ 3.39
UPK1A-204ENST00000617999 CCDC180Q9P1Z9 1646 aa32.04■■■□□ 2.72
UPK1A-204ENST00000617999 ABCC9O60706 1549 aa30.59■■■□□ 2.49
UPK1A-204ENST00000617999 ZCCHC6Q5VYS8 1495 aaKnown RBP30.39■■■□□ 2.46
UPK1A-204ENST00000617999 DCAF1Q9Y4B6 1507 aa29.99■■■□□ 2.39
UPK1A-204ENST00000617999 MYO15BQ96JP2 1530 aa29.85■■■□□ 2.37
UPK1A-204ENST00000617999 NACADO15069 1562 aa29.83■■■□□ 2.37
UPK1A-204ENST00000617999 DCAF8L2P0C7V8 631 aa29.73■■■□□ 2.35
UPK1A-204ENST00000617999 RB1CC1Q8TDY2 1594 aa29.72■■■□□ 2.35
UPK1A-204ENST00000617999 SCRIBQ14160 1630 aa29.29■■■□□ 2.28
UPK1A-204ENST00000617999 UNC13AQ9UPW8 1703 aa29.28■■■□□ 2.28
UPK1A-204ENST00000617999 SHROOM4Q9ULL8 1493 aa28.99■■■□□ 2.23
UPK1A-204ENST00000617999 BICRAQ9NZM4 1560 aa28.89■■■□□ 2.22
UPK1A-204ENST00000617999 PABPN1Q86U42 306 aaKnown RBP eCLIP28.57■■■□□ 2.16
UPK1A-204ENST00000617999 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
UPK1A-204ENST00000617999 SMARCA4P51532 1647 aa28.05■■■□□ 2.08
UPK1A-204ENST00000617999 EIF4G1Q04637 1599 aaKnown RBP28.03■■■□□ 2.08
UPK1A-204ENST00000617999 BAZ1AQ9NRL2 1556 aaPredicted RBP28.03■■■□□ 2.08
UPK1A-204ENST00000617999 MROH2BQ7Z745 1585 aa27.97■■■□□ 2.07
UPK1A-204ENST00000617999 RSF1Q96T23 1441 aaPredicted RBP27.81■■■□□ 2.04
UPK1A-204ENST00000617999 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
UPK1A-204ENST00000617999 WIZO95785 1651 aa27.75■■■□□ 2.03
UPK1A-204ENST00000617999 PEG3Q9GZU2 1588 aa27.73■■■□□ 2.03
UPK1A-204ENST00000617999 SMARCA2P51531 1590 aa27.64■■■□□ 2.01
UPK1A-204ENST00000617999 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
UPK1A-204ENST00000617999 HMGXB3Q12766 1538 aa27.51■■□□□ 1.99
UPK1A-204ENST00000617999 TOP2AP11388 1531 aaKnown RBP27.47■■□□□ 1.99
UPK1A-204ENST00000617999 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
UPK1A-204ENST00000617999 NCAPD3P42695 1498 aa27.45■■□□□ 1.99
UPK1A-204ENST00000617999 BAZ1BQ9UIG0 1483 aaKnown RBP27.45■■□□□ 1.99
UPK1A-204ENST00000617999 DNAJC5BQ9UF47 199 aa27.36■■□□□ 1.97
UPK1A-204ENST00000617999 CCDC88BA6NC98 1476 aa27.05■■□□□ 1.92
UPK1A-204ENST00000617999 PRDM2Q13029 1718 aa26.82■■□□□ 1.88
UPK1A-204ENST00000617999 LAMC3Q9Y6N6 1575 aa26.71■■□□□ 1.87
UPK1A-204ENST00000617999 CFTRP13569 1480 aa26.71■■□□□ 1.87
UPK1A-204ENST00000617999 NESP48681 1621 aa26.71■■□□□ 1.87
UPK1A-204ENST00000617999 CADPSQ9ULU8 1353 aa26.66■■□□□ 1.86
UPK1A-204ENST00000617999 KIF21AQ7Z4S6 1674 aa26.54■■□□□ 1.84
UPK1A-204ENST00000617999 FANCD2Q9BXW9 1451 aa26.44■■□□□ 1.82
UPK1A-204ENST00000617999 ABCC8Q09428 1581 aa26.38■■□□□ 1.81
UPK1A-204ENST00000617999 PDS5BQ9NTI5 1447 aa26.38■■□□□ 1.81
UPK1A-204ENST00000617999 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
UPK1A-204ENST00000617999 ERCC6Q03468 1493 aa26.27■■□□□ 1.8
UPK1A-204ENST00000617999 THOC2Q8NI27 1593 aaKnown RBP26.27■■□□□ 1.8
UPK1A-204ENST00000617999 SYNJ1O43426 1573 aa26.24■■□□□ 1.79
UPK1A-204ENST00000617999 CUX1P39880 1505 aa26.22■■□□□ 1.79
UPK1A-204ENST00000617999 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
UPK1A-204ENST00000617999 WRNQ14191 1432 aaPredicted RBP eCLIP26.2■■□□□ 1.78
UPK1A-204ENST00000617999 URB2Q14146 1524 aaKnown RBP26.19■■□□□ 1.78
UPK1A-204ENST00000617999 MRC2Q9UBG0 1479 aa26.19■■□□□ 1.78
UPK1A-204ENST00000617999 DNMBPQ6XZF7 1577 aa26.19■■□□□ 1.78
UPK1A-204ENST00000617999 TOP2BQ02880 1626 aa26.16■■□□□ 1.78
UPK1A-204ENST00000617999 WDR62O43379 1518 aa26.14■■□□□ 1.78
UPK1A-204ENST00000617999 TOPBP1Q92547 1522 aa26.13■■□□□ 1.77
UPK1A-204ENST00000617999 CHIC1Q5VXU3 224 aa26.04■■□□□ 1.76
UPK1A-204ENST00000617999 FGD5Q6ZNL6 1462 aa26■■□□□ 1.75
UPK1A-204ENST00000617999 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
UPK1A-204ENST00000617999 WDR97A6NE52 1622 aa25.92■■□□□ 1.74
UPK1A-204ENST00000617999 TRIM41Q8WV44 630 aa25.86■■□□□ 1.73
UPK1A-204ENST00000617999 CUX2O14529 1486 aa25.85■■□□□ 1.73
UPK1A-204ENST00000617999 TARBP1Q13395 1621 aaKnown RBP25.85■■□□□ 1.73
UPK1A-204ENST00000617999 RAD54L2Q9Y4B4 1467 aa25.81■■□□□ 1.72
UPK1A-204ENST00000617999 ABCA10Q8WWZ4 1543 aa25.74■■□□□ 1.71
UPK1A-204ENST00000617999 IFT140Q96RY7 1462 aa25.74■■□□□ 1.71
UPK1A-204ENST00000617999 SOGA1O94964 1423 aa25.72■■□□□ 1.71
UPK1A-204ENST00000617999 ABCA5Q8WWZ7 1642 aa25.7■■□□□ 1.71
UPK1A-204ENST00000617999 EIF4G3O43432 1585 aaKnown RBP25.67■■□□□ 1.7
UPK1A-204ENST00000617999 ZNF608Q9ULD9 1512 aaPredicted RBP25.63■■□□□ 1.69
UPK1A-204ENST00000617999 RUSC2Q8N2Y8 1516 aa25.63■■□□□ 1.69
UPK1A-204ENST00000617999 PBRM1Q86U86 1689 aa25.62■■□□□ 1.69
UPK1A-204ENST00000617999 KIF27Q86VH2 1401 aa25.55■■□□□ 1.68
UPK1A-204ENST00000617999 TDRD9Q8NDG6 1382 aaKnown RBP25.53■■□□□ 1.68
UPK1A-204ENST00000617999 GAPVD1Q14C86 1478 aa25.51■■□□□ 1.67
UPK1A-204ENST00000617999 AQRO60306 1485 aaKnown RBP eCLIP25.5■■□□□ 1.67
UPK1A-204ENST00000617999 EEA1Q15075 1411 aa25.5■■□□□ 1.67
UPK1A-204ENST00000617999 ERICH3Q5RHP9 1530 aa25.45■■□□□ 1.66
UPK1A-204ENST00000617999 CUL7Q14999 1698 aa25.42■■□□□ 1.66
UPK1A-204ENST00000617999 ADAMTS12P58397 1594 aa25.42■■□□□ 1.66
UPK1A-204ENST00000617999 GRIN2BQ13224 1484 aa25.41■■□□□ 1.66
UPK1A-204ENST00000617999 FAM9AQ8IZU1 332 aaPredicted RBP25.38■■□□□ 1.65
UPK1A-204ENST00000617999 SNAPC4Q5SXM2 1469 aa25.37■■□□□ 1.65
UPK1A-204ENST00000617999 KIF21BO75037 1637 aa25.35■■□□□ 1.65
UPK1A-204ENST00000617999 IGF1RP08069 1367 aa25.32■■□□□ 1.64
UPK1A-204ENST00000617999 MAGI1Q96QZ7 1491 aaPredicted RBP25.3■■□□□ 1.64
UPK1A-204ENST00000617999 PRXQ9BXM0 1461 aa25.29■■□□□ 1.64
UPK1A-204ENST00000617999 CHD1O14646 1710 aa25.26■■□□□ 1.63
UPK1A-204ENST00000617999 CSRNP3Q8WYN3 585 aa25.25■■□□□ 1.63
UPK1A-204ENST00000617999 FHAD1B1AJZ9 1412 aa25.21■■□□□ 1.63
UPK1A-204ENST00000617999 RAPGEF2Q9Y4G8 1499 aa25.21■■□□□ 1.63
UPK1A-204ENST00000617999 CARMIL1Q5VZK9 1371 aa25.2■■□□□ 1.63
UPK1A-204ENST00000617999 SYNJ2O15056 1496 aa25.19■■□□□ 1.62
UPK1A-204ENST00000617999 GOLGA3Q08378 1498 aa25.17■■□□□ 1.62
UPK1A-204ENST00000617999 GRIN2AQ12879 1464 aa25.14■■□□□ 1.61
UPK1A-204ENST00000617999 CTTNBP2Q8WZ74 1663 aa25.12■■□□□ 1.61
UPK1A-204ENST00000617999 CEP170Q5SW79 1584 aa25.06■■□□□ 1.6
UPK1A-204ENST00000617999 EHMT2Q96KQ7 1210 aa25.03■■□□□ 1.6
UPK1A-204ENST00000617999 NUP160Q12769 1436 aa24.99■■□□□ 1.59
UPK1A-204ENST00000617999 LOC105371045A0A1W2PR82 267 aa24.95■■□□□ 1.58
UPK1A-204ENST00000617999 CHMP7Q8WUX9 453 aaPredicted RBP24.95■■□□□ 1.58
UPK1A-204ENST00000617999 FBLN2P98095 1184 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms