RNA–Protein interactions for RNA: ENST00000442241.8

NLE1-202, Transcript of notchless homolog 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NLE1, Length 2,588 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLE1-202ENST00000442241 NISCHQ9Y2I1 1504 aa33.64■■■□□ 2.98
NLE1-202ENST00000442241 SHROOM4Q9ULL8 1493 aa29.01■■■□□ 2.23
NLE1-202ENST00000442241 CCDC180Q9P1Z9 1646 aa28.5■■■□□ 2.15
NLE1-202ENST00000442241 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
NLE1-202ENST00000442241 ZCCHC6Q5VYS8 1495 aaKnown RBP28.38■■■□□ 2.13
NLE1-202ENST00000442241 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
NLE1-202ENST00000442241 DCAF1Q9Y4B6 1507 aa27.37■■□□□ 1.97
NLE1-202ENST00000442241 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
NLE1-202ENST00000442241 MYO15BQ96JP2 1530 aa27.19■■□□□ 1.94
NLE1-202ENST00000442241 SCRIBQ14160 1630 aa27.04■■□□□ 1.92
NLE1-202ENST00000442241 ABCC9O60706 1549 aa26.97■■□□□ 1.91
NLE1-202ENST00000442241 LOC105371045A0A1W2PR82 267 aa26.65■■□□□ 1.86
NLE1-202ENST00000442241 RSF1Q96T23 1441 aaPredicted RBP26.63■■□□□ 1.85
NLE1-202ENST00000442241 NACADO15069 1562 aa26.45■■□□□ 1.82
NLE1-202ENST00000442241 CECR2Q9BXF3 1484 aa26.44■■□□□ 1.82
NLE1-202ENST00000442241 RB1CC1Q8TDY2 1594 aa26.39■■□□□ 1.82
NLE1-202ENST00000442241 PCGF6Q9BYE7 350 aa26.39■■□□□ 1.82
NLE1-202ENST00000442241 FAM9AQ8IZU1 332 aaPredicted RBP26.27■■□□□ 1.8
NLE1-202ENST00000442241 MROH2BQ7Z745 1585 aa26.26■■□□□ 1.79
NLE1-202ENST00000442241 TRIM41Q8WV44 630 aa26.24■■□□□ 1.79
NLE1-202ENST00000442241 EHMT2Q96KQ7 1210 aa26.24■■□□□ 1.79
NLE1-202ENST00000442241 WIZO95785 1651 aa26.15■■□□□ 1.78
NLE1-202ENST00000442241 HRCP23327 699 aa26.08■■□□□ 1.77
NLE1-202ENST00000442241 PABPN1Q86U42 306 aaKnown RBP eCLIP25.89■■□□□ 1.74
NLE1-202ENST00000442241 PPARGC1BQ86YN6 1023 aaKnown RBP25.88■■□□□ 1.73
NLE1-202ENST00000442241 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.73
NLE1-202ENST00000442241 BAZ1AQ9NRL2 1556 aaPredicted RBP25.81■■□□□ 1.72
NLE1-202ENST00000442241 TRIM26Q12899 539 aaPredicted RBP25.71■■□□□ 1.71
NLE1-202ENST00000442241 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
NLE1-202ENST00000442241 CCDC88BA6NC98 1476 aa25.58■■□□□ 1.69
NLE1-202ENST00000442241 ABCC8Q09428 1581 aa25.57■■□□□ 1.68
NLE1-202ENST00000442241 TOP2AP11388 1531 aaKnown RBP25.56■■□□□ 1.68
NLE1-202ENST00000442241 EIF4G1Q04637 1599 aaKnown RBP25.53■■□□□ 1.68
NLE1-202ENST00000442241 BICRAQ9NZM4 1560 aa25.5■■□□□ 1.67
NLE1-202ENST00000442241 SMARCA2P51531 1590 aa25.48■■□□□ 1.67
NLE1-202ENST00000442241 TTBK1Q5TCY1 1321 aaPredicted RBP25.3■■□□□ 1.64
NLE1-202ENST00000442241 SOGA1O94964 1423 aa25.28■■□□□ 1.64
NLE1-202ENST00000442241 RUSC2Q8N2Y8 1516 aa25.22■■□□□ 1.63
NLE1-202ENST00000442241 UBTFP17480 764 aaKnown RBP25.08■■□□□ 1.61
NLE1-202ENST00000442241 ATAD2BQ9ULI0 1458 aa25.08■■□□□ 1.6
NLE1-202ENST00000442241 CSRNP3Q8WYN3 585 aa25.05■■□□□ 1.6
NLE1-202ENST00000442241 BAZ1BQ9UIG0 1483 aaKnown RBP25.03■■□□□ 1.6
NLE1-202ENST00000442241 WRNQ14191 1432 aaPredicted RBP eCLIP25.02■■□□□ 1.6
NLE1-202ENST00000442241 PEG3Q9GZU2 1588 aa25.02■■□□□ 1.6
NLE1-202ENST00000442241 CEP162Q5TB80 1403 aa25■■□□□ 1.59
NLE1-202ENST00000442241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.97■■□□□ 1.59
NLE1-202ENST00000442241 SYNJ1O43426 1573 aa24.94■■□□□ 1.58
NLE1-202ENST00000442241 ZEB1P37275 1124 aaPredicted RBP24.91■■□□□ 1.58
NLE1-202ENST00000442241 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
NLE1-202ENST00000442241 TNIKQ9UKE5 1360 aa24.87■■□□□ 1.57
NLE1-202ENST00000442241 PELP1Q8IZL8 1130 aaKnown RBP24.82■■□□□ 1.56
NLE1-202ENST00000442241 EEA1Q15075 1411 aa24.8■■□□□ 1.56
NLE1-202ENST00000442241 CCER1Q8TC90 406 aaPredicted RBP24.79■■□□□ 1.56
NLE1-202ENST00000442241 GOLGA3Q08378 1498 aa24.78■■□□□ 1.56
NLE1-202ENST00000442241 CEP164Q9UPV0 1460 aa24.63■■□□□ 1.53
NLE1-202ENST00000442241 RAPGEF2Q9Y4G8 1499 aa24.63■■□□□ 1.53
NLE1-202ENST00000442241 CLIP1P30622 1438 aa24.57■■□□□ 1.52
NLE1-202ENST00000442241 KIF21BO75037 1637 aa24.54■■□□□ 1.52
NLE1-202ENST00000442241 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
NLE1-202ENST00000442241 NCAPD3P42695 1498 aa24.52■■□□□ 1.52
NLE1-202ENST00000442241 HNRNPUL2Q1KMD3 747 aaKnown RBP24.5■■□□□ 1.51
NLE1-202ENST00000442241 SCAF1Q9H7N4 1312 aaKnown RBP24.47■■□□□ 1.51
NLE1-202ENST00000442241 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
NLE1-202ENST00000442241 CUX1P39880 1505 aa24.44■■□□□ 1.5
NLE1-202ENST00000442241 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
NLE1-202ENST00000442241 APLP2Q06481 763 aa24.38■■□□□ 1.49
NLE1-202ENST00000442241 VPS8Q8N3P4 1428 aa24.37■■□□□ 1.49
NLE1-202ENST00000442241 CFTRP13569 1480 aa24.32■■□□□ 1.48
NLE1-202ENST00000442241 PRXQ9BXM0 1461 aa24.26■■□□□ 1.47
NLE1-202ENST00000442241 KIF27Q86VH2 1401 aa24.22■■□□□ 1.47
NLE1-202ENST00000442241 KANK4Q5T7N3 995 aaPredicted RBP24.19■■□□□ 1.46
NLE1-202ENST00000442241 ARAP1Q96P48 1450 aa24.18■■□□□ 1.46
NLE1-202ENST00000442241 CC2D2AQ9P2K1 1620 aa24.15■■□□□ 1.46
NLE1-202ENST00000442241 DIEXFQ68CQ4 756 aaKnown RBP24.15■■□□□ 1.46
NLE1-202ENST00000442241 ERICH3Q5RHP9 1530 aa24.14■■□□□ 1.46
NLE1-202ENST00000442241 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.46
NLE1-202ENST00000442241 CUX2O14529 1486 aa24.14■■□□□ 1.45
NLE1-202ENST00000442241 FGD5Q6ZNL6 1462 aa24.04■■□□□ 1.44
NLE1-202ENST00000442241 IGF1RP08069 1367 aa24.04■■□□□ 1.44
NLE1-202ENST00000442241 ITGAEP38570 1179 aa24.01■■□□□ 1.43
NLE1-202ENST00000442241 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
NLE1-202ENST00000442241 P3H3Q8IVL6 736 aa24■■□□□ 1.43
NLE1-202ENST00000442241 ARHGAP35Q9NRY4 1499 aa24■■□□□ 1.43
NLE1-202ENST00000442241 NESP48681 1621 aa23.99■■□□□ 1.43
NLE1-202ENST00000442241 ACIN1Q9UKV3 1341 aaKnown RBP23.98■■□□□ 1.43
NLE1-202ENST00000442241 ZNF316A6NFI3 1004 aaPredicted RBP23.96■■□□□ 1.43
NLE1-202ENST00000442241 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
NLE1-202ENST00000442241 CARMIL1Q5VZK9 1371 aa23.94■■□□□ 1.42
NLE1-202ENST00000442241 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
NLE1-202ENST00000442241 RAD54L2Q9Y4B4 1467 aa23.93■■□□□ 1.42
NLE1-202ENST00000442241 ATP1B4Q9UN42 357 aaPredicted RBP23.91■■□□□ 1.42
NLE1-202ENST00000442241 NEUROD1Q13562 356 aa23.88■■□□□ 1.41
NLE1-202ENST00000442241 YTHDC1Q96MU7 727 aaKnown RBP23.8■■□□□ 1.4
NLE1-202ENST00000442241 MYT1Q01538 1121 aa23.79■■□□□ 1.4
NLE1-202ENST00000442241 DHX57Q6P158 1386 aaKnown RBP23.77■■□□□ 1.4
NLE1-202ENST00000442241 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
NLE1-202ENST00000442241 TOPBP1Q92547 1522 aa23.75■■□□□ 1.39
NLE1-202ENST00000442241 CCNB3Q8WWL7 1395 aa23.74■■□□□ 1.39
NLE1-202ENST00000442241 MIER1Q8N108 512 aa23.73■■□□□ 1.39
NLE1-202ENST00000442241 RRBP1Q9P2E9 1410 aaKnown RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms