RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 NISCHQ9Y2I1 1504 aa38.23■■■■□ 3.71
VAMP4-202ENST00000367740 ABCC9O60706 1549 aa35.52■■■■□ 3.28
VAMP4-202ENST00000367740 CCDC180Q9P1Z9 1646 aa34.77■■■■□ 3.16
VAMP4-202ENST00000367740 DNAJC5BQ9UF47 199 aa34.05■■■■□ 3.04
VAMP4-202ENST00000367740 RB1CC1Q8TDY2 1594 aa33.45■■■□□ 2.95
VAMP4-202ENST00000367740 NACADO15069 1562 aa33■■■□□ 2.87
VAMP4-202ENST00000367740 PABPN1Q86U42 306 aaKnown RBP eCLIP32.85■■■□□ 2.85
VAMP4-202ENST00000367740 UNC13AQ9UPW8 1703 aa32.82■■■□□ 2.85
VAMP4-202ENST00000367740 BICRAQ9NZM4 1560 aa32.58■■■□□ 2.81
VAMP4-202ENST00000367740 DCAF8L2P0C7V8 631 aa32.45■■■□□ 2.79
VAMP4-202ENST00000367740 MYO15BQ96JP2 1530 aa32.26■■■□□ 2.76
VAMP4-202ENST00000367740 CC2D2AQ9P2K1 1620 aa32.09■■■□□ 2.73
VAMP4-202ENST00000367740 CECR2Q9BXF3 1484 aa32.08■■■□□ 2.73
VAMP4-202ENST00000367740 SHROOM4Q9ULL8 1493 aa32■■■□□ 2.71
VAMP4-202ENST00000367740 AEBP2Q6ZN18 517 aaPredicted RBP31.94■■■□□ 2.7
VAMP4-202ENST00000367740 DNAJC5Q9H3Z4 198 aa31.86■■■□□ 2.69
VAMP4-202ENST00000367740 EIF4G1Q04637 1599 aaKnown RBP31.81■■■□□ 2.68
VAMP4-202ENST00000367740 SCRIBQ14160 1630 aa31.6■■■□□ 2.65
VAMP4-202ENST00000367740 DCAF1Q9Y4B6 1507 aa31.54■■■□□ 2.64
VAMP4-202ENST00000367740 ZCCHC6Q5VYS8 1495 aaKnown RBP31.53■■■□□ 2.64
VAMP4-202ENST00000367740 CUX2O14529 1486 aa30.98■■■□□ 2.55
VAMP4-202ENST00000367740 ERCC6Q03468 1493 aa30.7■■■□□ 2.5
VAMP4-202ENST00000367740 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
VAMP4-202ENST00000367740 NESP48681 1621 aa30.29■■■□□ 2.44
VAMP4-202ENST00000367740 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
VAMP4-202ENST00000367740 THOC2Q8NI27 1593 aaKnown RBP30.24■■■□□ 2.43
VAMP4-202ENST00000367740 HMGXB3Q12766 1538 aa30.21■■■□□ 2.43
VAMP4-202ENST00000367740 SMARCA2P51531 1590 aa30.13■■■□□ 2.41
VAMP4-202ENST00000367740 TRIM41Q8WV44 630 aa30.08■■■□□ 2.41
VAMP4-202ENST00000367740 SMARCA4P51532 1647 aa30.06■■■□□ 2.4
VAMP4-202ENST00000367740 KIF21AQ7Z4S6 1674 aa29.95■■■□□ 2.39
VAMP4-202ENST00000367740 LAMC3Q9Y6N6 1575 aa29.94■■■□□ 2.38
VAMP4-202ENST00000367740 BAZ1BQ9UIG0 1483 aaKnown RBP29.9■■■□□ 2.38
VAMP4-202ENST00000367740 CHIC1Q5VXU3 224 aa29.86■■■□□ 2.37
VAMP4-202ENST00000367740 PEG3Q9GZU2 1588 aa29.77■■■□□ 2.36
VAMP4-202ENST00000367740 BAZ1AQ9NRL2 1556 aaPredicted RBP29.73■■■□□ 2.35
VAMP4-202ENST00000367740 PDS5BQ9NTI5 1447 aa29.71■■■□□ 2.35
VAMP4-202ENST00000367740 WDR62O43379 1518 aa29.58■■■□□ 2.33
VAMP4-202ENST00000367740 MRC2Q9UBG0 1479 aa29.58■■■□□ 2.33
VAMP4-202ENST00000367740 MROH2BQ7Z745 1585 aa29.47■■■□□ 2.31
VAMP4-202ENST00000367740 CADPSQ9ULU8 1353 aa29.44■■■□□ 2.3
VAMP4-202ENST00000367740 OSCARQ8IYS5 282 aa29.29■■■□□ 2.28
VAMP4-202ENST00000367740 CEP164Q9UPV0 1460 aa29.28■■■□□ 2.28
VAMP4-202ENST00000367740 RIMBP3CA6NJZ7 1639 aa29.19■■■□□ 2.26
VAMP4-202ENST00000367740 RIMBP3BA6NNM3 1639 aa29.19■■■□□ 2.26
VAMP4-202ENST00000367740 RIMBP3Q9UFD9 1639 aa29.19■■■□□ 2.26
VAMP4-202ENST00000367740 FANCD2Q9BXW9 1451 aa29.16■■■□□ 2.26
VAMP4-202ENST00000367740 WIZO95785 1651 aa29.1■■■□□ 2.25
VAMP4-202ENST00000367740 URB2Q14146 1524 aaKnown RBP29.01■■■□□ 2.23
VAMP4-202ENST00000367740 CFTRP13569 1480 aa28.97■■■□□ 2.23
VAMP4-202ENST00000367740 ARHGEF11O15085 1522 aa28.97■■■□□ 2.23
VAMP4-202ENST00000367740 ZNF608Q9ULD9 1512 aaPredicted RBP28.79■■■□□ 2.2
VAMP4-202ENST00000367740 PRDM2Q13029 1718 aa28.76■■■□□ 2.19
VAMP4-202ENST00000367740 IFT140Q96RY7 1462 aa28.71■■■□□ 2.19
VAMP4-202ENST00000367740 CYB5RLQ6IPT4 315 aa28.67■■■□□ 2.18
VAMP4-202ENST00000367740 TOP2AP11388 1531 aaKnown RBP28.65■■■□□ 2.18
VAMP4-202ENST00000367740 EIF4G3O43432 1585 aaKnown RBP28.65■■■□□ 2.18
VAMP4-202ENST00000367740 ARAP1Q96P48 1450 aa28.64■■■□□ 2.17
VAMP4-202ENST00000367740 CHD1O14646 1710 aa28.62■■■□□ 2.17
VAMP4-202ENST00000367740 TRHP20396 242 aaPredicted RBP28.61■■■□□ 2.17
VAMP4-202ENST00000367740 TOPBP1Q92547 1522 aa28.53■■■□□ 2.16
VAMP4-202ENST00000367740 RSF1Q96T23 1441 aaPredicted RBP28.49■■■□□ 2.15
VAMP4-202ENST00000367740 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
VAMP4-202ENST00000367740 DNMBPQ6XZF7 1577 aa28.37■■■□□ 2.13
VAMP4-202ENST00000367740 AQRO60306 1485 aaKnown RBP eCLIP28.37■■■□□ 2.13
VAMP4-202ENST00000367740 ABCC8Q09428 1581 aa28.35■■■□□ 2.13
VAMP4-202ENST00000367740 CCDC88BA6NC98 1476 aa28.29■■■□□ 2.12
VAMP4-202ENST00000367740 FBLN2P98095 1184 aa28.26■■■□□ 2.11
VAMP4-202ENST00000367740 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
VAMP4-202ENST00000367740 POLA1P09884 1462 aaPredicted RBP28.19■■■□□ 2.1
VAMP4-202ENST00000367740 SNAPC4Q5SXM2 1469 aa28.09■■■□□ 2.09
VAMP4-202ENST00000367740 SYNJ1O43426 1573 aa28.09■■■□□ 2.09
VAMP4-202ENST00000367740 RAD54L2Q9Y4B4 1467 aa28.08■■■□□ 2.09
VAMP4-202ENST00000367740 TDRD9Q8NDG6 1382 aaKnown RBP28.03■■■□□ 2.08
VAMP4-202ENST00000367740 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
VAMP4-202ENST00000367740 MAGI1Q96QZ7 1491 aaPredicted RBP27.97■■■□□ 2.07
VAMP4-202ENST00000367740 SOGA1O94964 1423 aa27.96■■■□□ 2.07
VAMP4-202ENST00000367740 GAPVD1Q14C86 1478 aa27.93■■■□□ 2.06
VAMP4-202ENST00000367740 CHMP7Q8WUX9 453 aaPredicted RBP27.91■■■□□ 2.06
VAMP4-202ENST00000367740 SYNJ2O15056 1496 aa27.89■■■□□ 2.05
VAMP4-202ENST00000367740 FGD5Q6ZNL6 1462 aa27.88■■■□□ 2.05
VAMP4-202ENST00000367740 GRIN2BQ13224 1484 aa27.86■■■□□ 2.05
VAMP4-202ENST00000367740 PBRM1Q86U86 1689 aa27.81■■■□□ 2.04
VAMP4-202ENST00000367740 CUX1P39880 1505 aa27.74■■■□□ 2.03
VAMP4-202ENST00000367740 ERCC6L2Q5T890 1561 aa27.73■■■□□ 2.03
VAMP4-202ENST00000367740 KIF13AQ9H1H9 1805 aa27.67■■■□□ 2.02
VAMP4-202ENST00000367740 ABCA5Q8WWZ7 1642 aa27.63■■■□□ 2.01
VAMP4-202ENST00000367740 CEP170Q5SW79 1584 aa27.58■■■□□ 2.01
VAMP4-202ENST00000367740 GRIN2AQ12879 1464 aa27.53■■■□□ 2
VAMP4-202ENST00000367740 SHROOM2Q13796 1616 aa27.52■■■□□ 2
VAMP4-202ENST00000367740 ABCA10Q8WWZ4 1543 aa27.51■■□□□ 1.99
VAMP4-202ENST00000367740 NUP160Q12769 1436 aa27.47■■□□□ 1.99
VAMP4-202ENST00000367740 ADAMTS12P58397 1594 aa27.47■■□□□ 1.99
VAMP4-202ENST00000367740 SENP3Q9H4L4 574 aaPredicted RBP27.44■■□□□ 1.98
VAMP4-202ENST00000367740 ILDR1Q86SU0 546 aaPredicted RBP27.34■■□□□ 1.97
VAMP4-202ENST00000367740 ABCC10Q5T3U5 1492 aa27.3■■□□□ 1.96
VAMP4-202ENST00000367740 DIP2BQ9P265 1576 aa27.28■■□□□ 1.96
VAMP4-202ENST00000367740 KDM4FA0A1W2PPD8 638 aa27.28■■□□□ 1.96
VAMP4-202ENST00000367740 FHAD1B1AJZ9 1412 aa27.25■■□□□ 1.95
VAMP4-202ENST00000367740 KDM6BO15054 1643 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms