RNA–Protein interactions for RNA: ENST00000579662.5

ITGB4-206, Transcript of integrin subunit beta 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ITGB4, Length 5,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-206ENST00000579662 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
ITGB4-206ENST00000579662 NISCHQ9Y2I1 1504 aa26.2■■□□□ 1.78
ITGB4-206ENST00000579662 SUPT5HO00267 1087 aaKnown RBP25.13■■□□□ 1.61
ITGB4-206ENST00000579662 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
ITGB4-206ENST00000579662 EHMT2Q96KQ7 1210 aa24.02■■□□□ 1.44
ITGB4-206ENST00000579662 APLP2Q06481 763 aa23.96■■□□□ 1.43
ITGB4-206ENST00000579662 FAM9AQ8IZU1 332 aaPredicted RBP23.73■■□□□ 1.39
ITGB4-206ENST00000579662 PELP1Q8IZL8 1130 aaKnown RBP23.54■■□□□ 1.36
ITGB4-206ENST00000579662 TRIM41Q8WV44 630 aa23.45■■□□□ 1.34
ITGB4-206ENST00000579662 PCGF6Q9BYE7 350 aa23.25■■□□□ 1.31
ITGB4-206ENST00000579662 TTBK1Q5TCY1 1321 aaPredicted RBP23.23■■□□□ 1.31
ITGB4-206ENST00000579662 ZEB1P37275 1124 aaPredicted RBP23.17■■□□□ 1.3
ITGB4-206ENST00000579662 RANGAP1P46060 587 aaPredicted RBP23.13■■□□□ 1.29
ITGB4-206ENST00000579662 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
ITGB4-206ENST00000579662 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
ITGB4-206ENST00000579662 CCER1Q8TC90 406 aaPredicted RBP22.97■■□□□ 1.27
ITGB4-206ENST00000579662 CENPBP07199 599 aaPredicted RBP22.82■■□□□ 1.24
ITGB4-206ENST00000579662 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
ITGB4-206ENST00000579662 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.18
ITGB4-206ENST00000579662 ABCC9O60706 1549 aa22.41■■□□□ 1.18
ITGB4-206ENST00000579662 PPARGC1BQ86YN6 1023 aaKnown RBP22.4■■□□□ 1.18
ITGB4-206ENST00000579662 ERICH6Q7L0X2 663 aa22.38■■□□□ 1.17
ITGB4-206ENST00000579662 NEFLP07196 543 aa22.36■■□□□ 1.17
ITGB4-206ENST00000579662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.31■■□□□ 1.16
ITGB4-206ENST00000579662 HNRNPUL2Q1KMD3 747 aaKnown RBP22.31■■□□□ 1.16
ITGB4-206ENST00000579662 LOC105371045A0A1W2PR82 267 aa22.23■■□□□ 1.15
ITGB4-206ENST00000579662 ITGAEP38570 1179 aa22.19■■□□□ 1.14
ITGB4-206ENST00000579662 YTHDC1Q96MU7 727 aaKnown RBP22.17■■□□□ 1.14
ITGB4-206ENST00000579662 MYT1LQ9UL68 1186 aa22.17■■□□□ 1.14
ITGB4-206ENST00000579662 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
ITGB4-206ENST00000579662 HRCP23327 699 aa22.11■■□□□ 1.13
ITGB4-206ENST00000579662 POLR3GLQ9BT43 218 aa21.9■■□□□ 1.1
ITGB4-206ENST00000579662 FAM50AQ14320 339 aaKnown RBP21.8■■□□□ 1.08
ITGB4-206ENST00000579662 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
ITGB4-206ENST00000579662 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
ITGB4-206ENST00000579662 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
ITGB4-206ENST00000579662 MYT1Q01538 1121 aa21.64■■□□□ 1.05
ITGB4-206ENST00000579662 SCRIBQ14160 1630 aa21.62■■□□□ 1.05
ITGB4-206ENST00000579662 DAXXQ9UER7 740 aaPredicted RBP21.61■■□□□ 1.05
ITGB4-206ENST00000579662 DIEXFQ68CQ4 756 aaKnown RBP21.57■■□□□ 1.04
ITGB4-206ENST00000579662 CSRNP3Q8WYN3 585 aa21.55■■□□□ 1.04
ITGB4-206ENST00000579662 SLC4A1APQ9BWU0 796 aaKnown RBP21.54■■□□□ 1.04
ITGB4-206ENST00000579662 FBLN2P98095 1184 aa21.53■■□□□ 1.04
ITGB4-206ENST00000579662 CNGB1Q14028 1251 aaPredicted RBP21.52■■□□□ 1.03
ITGB4-206ENST00000579662 NEUROD1Q13562 356 aa21.47■■□□□ 1.03
ITGB4-206ENST00000579662 CDK11AQ9UQ88 783 aaPredicted RBP21.33■■□□□ 1.01
ITGB4-206ENST00000579662 ANP32CO43423 234 aa21.31■■□□□ 1
ITGB4-206ENST00000579662 P3H3Q8IVL6 736 aa21.31■■□□□ 1
ITGB4-206ENST00000579662 ZNF326Q5BKZ1 582 aaKnown RBP21.28■■□□□ 1
ITGB4-206ENST00000579662 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
ITGB4-206ENST00000579662 ZNF316A6NFI3 1004 aaPredicted RBP21.22■□□□□ 0.99
ITGB4-206ENST00000579662 CLSPNQ9HAW4 1339 aa21.2■□□□□ 0.98
ITGB4-206ENST00000579662 ARID3CA6NKF2 412 aa21.15■□□□□ 0.98
ITGB4-206ENST00000579662 ZNF777Q9ULD5 760 aaPredicted RBP21.13■□□□□ 0.97
ITGB4-206ENST00000579662 DCAF1Q9Y4B6 1507 aa21.12■□□□□ 0.97
ITGB4-206ENST00000579662 NACADO15069 1562 aa21.08■□□□□ 0.96
ITGB4-206ENST00000579662 RTL5Q5HYW3 569 aaPredicted RBP21.03■□□□□ 0.96
ITGB4-206ENST00000579662 NEFMP07197 916 aa20.99■□□□□ 0.95
ITGB4-206ENST00000579662 ZBTB47Q9UFB7 747 aaPredicted RBP20.97■□□□□ 0.95
ITGB4-206ENST00000579662 TONSLQ96HA7 1378 aa20.97■□□□□ 0.95
ITGB4-206ENST00000579662 BCANQ96GW7 911 aa20.96■□□□□ 0.95
ITGB4-206ENST00000579662 NPM1P06748 294 aaKnown RBP eCLIP20.95■□□□□ 0.94
ITGB4-206ENST00000579662 EEA1Q15075 1411 aa20.94■□□□□ 0.94
ITGB4-206ENST00000579662 ESF1Q9H501 851 aaKnown RBP20.91■□□□□ 0.94
ITGB4-206ENST00000579662 RSF1Q96T23 1441 aaPredicted RBP20.91■□□□□ 0.94
ITGB4-206ENST00000579662 GTF3C3Q9Y5Q9 886 aa20.9■□□□□ 0.94
ITGB4-206ENST00000579662 CANXP27824 592 aaKnown RBP20.89■□□□□ 0.94
ITGB4-206ENST00000579662 CLIP1P30622 1438 aa20.85■□□□□ 0.93
ITGB4-206ENST00000579662 MTUS2Q5JR59 1369 aa20.83■□□□□ 0.92
ITGB4-206ENST00000579662 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.92
ITGB4-206ENST00000579662 CHMP7Q8WUX9 453 aaPredicted RBP20.81■□□□□ 0.92
ITGB4-206ENST00000579662 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
ITGB4-206ENST00000579662 STAG3Q9UJ98 1225 aa20.77■□□□□ 0.92
ITGB4-206ENST00000579662 TSPY4P0CV99 314 aa20.76■□□□□ 0.91
ITGB4-206ENST00000579662 TSPY10P0CW01 314 aa20.76■□□□□ 0.91
ITGB4-206ENST00000579662 WRNQ14191 1432 aaPredicted RBP eCLIP20.75■□□□□ 0.91
ITGB4-206ENST00000579662 CHGAP10645 457 aaKnown RBP20.74■□□□□ 0.91
ITGB4-206ENST00000579662 SLC24A1O60721 1099 aa20.73■□□□□ 0.91
ITGB4-206ENST00000579662 ACIN1Q9UKV3 1341 aaKnown RBP20.73■□□□□ 0.91
ITGB4-206ENST00000579662 CHIC2Q9UKJ5 165 aa20.71■□□□□ 0.91
ITGB4-206ENST00000579662 BAZ1AQ9NRL2 1556 aaPredicted RBP20.7■□□□□ 0.9
ITGB4-206ENST00000579662 KIF27Q86VH2 1401 aa20.67■□□□□ 0.9
ITGB4-206ENST00000579662 CEP162Q5TB80 1403 aa20.65■□□□□ 0.9
ITGB4-206ENST00000579662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.64■□□□□ 0.89
ITGB4-206ENST00000579662 CEP164Q9UPV0 1460 aa20.62■□□□□ 0.89
ITGB4-206ENST00000579662 DDX10Q13206 875 aaKnown RBP20.58■□□□□ 0.89
ITGB4-206ENST00000579662 TNIKQ9UKE5 1360 aa20.57■□□□□ 0.88
ITGB4-206ENST00000579662 ANP32AP39687 249 aaKnown RBP20.56■□□□□ 0.88
ITGB4-206ENST00000579662 PLEKHD1A6NEE1 506 aa20.55■□□□□ 0.88
ITGB4-206ENST00000579662 HNRNPUQ00839 825 aaKnown RBP eCLIP20.54■□□□□ 0.88
ITGB4-206ENST00000579662 FAM9BQ8IZU0 186 aa20.49■□□□□ 0.87
ITGB4-206ENST00000579662 TMC1Q8TDI8 760 aa20.49■□□□□ 0.87
ITGB4-206ENST00000579662 MYO15BQ96JP2 1530 aa20.48■□□□□ 0.87
ITGB4-206ENST00000579662 BCL11AQ9H165 835 aa20.47■□□□□ 0.87
ITGB4-206ENST00000579662 KDM2AQ9Y2K7 1162 aa20.46■□□□□ 0.87
ITGB4-206ENST00000579662 RRP7BPQ9NSQ0 103 aa20.45■□□□□ 0.86
ITGB4-206ENST00000579662 FKBP8Q14318 412 aa20.45■□□□□ 0.86
ITGB4-206ENST00000579662 WDR43Q15061 677 aaKnown RBP eCLIP20.45■□□□□ 0.86
ITGB4-206ENST00000579662 EIF4G2P78344 907 aaKnown RBP eCLIP20.44■□□□□ 0.86
ITGB4-206ENST00000579662 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms