RNA–Protein interactions for RNA: ENST00000254325.8

RFX1-201, Transcript of regulatory factor X1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFX1, Length 4,332 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1-201ENST00000254325 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.71
RFX1-201ENST00000254325 DCAF8L2P0C7V8 631 aa28.05■■■□□ 2.08
RFX1-201ENST00000254325 SHROOM4Q9ULL8 1493 aa27.87■■■□□ 2.05
RFX1-201ENST00000254325 SUPT5HO00267 1087 aaKnown RBP27.42■■□□□ 1.98
RFX1-201ENST00000254325 CCDC180Q9P1Z9 1646 aa27.09■■□□□ 1.93
RFX1-201ENST00000254325 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
RFX1-201ENST00000254325 ABCC9O60706 1549 aa26.13■■□□□ 1.77
RFX1-201ENST00000254325 DCAF1Q9Y4B6 1507 aa26■■□□□ 1.75
RFX1-201ENST00000254325 CHIC1Q5VXU3 224 aa25.95■■□□□ 1.74
RFX1-201ENST00000254325 SCRIBQ14160 1630 aa25.79■■□□□ 1.72
RFX1-201ENST00000254325 TRIM41Q8WV44 630 aa25.52■■□□□ 1.68
RFX1-201ENST00000254325 FAM9AQ8IZU1 332 aaPredicted RBP25.47■■□□□ 1.67
RFX1-201ENST00000254325 EHMT2Q96KQ7 1210 aa25.46■■□□□ 1.67
RFX1-201ENST00000254325 NACADO15069 1562 aa25.43■■□□□ 1.66
RFX1-201ENST00000254325 MYO15BQ96JP2 1530 aa25.34■■□□□ 1.65
RFX1-201ENST00000254325 LOC105371045A0A1W2PR82 267 aa25.34■■□□□ 1.65
RFX1-201ENST00000254325 RSF1Q96T23 1441 aaPredicted RBP25.3■■□□□ 1.64
RFX1-201ENST00000254325 PCGF6Q9BYE7 350 aa25.27■■□□□ 1.64
RFX1-201ENST00000254325 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
RFX1-201ENST00000254325 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.62
RFX1-201ENST00000254325 CECR2Q9BXF3 1484 aa25.05■■□□□ 1.6
RFX1-201ENST00000254325 MROH2BQ7Z745 1585 aa24.86■■□□□ 1.57
RFX1-201ENST00000254325 BAZ1AQ9NRL2 1556 aaPredicted RBP24.74■■□□□ 1.55
RFX1-201ENST00000254325 TRIM26Q12899 539 aaPredicted RBP24.71■■□□□ 1.55
RFX1-201ENST00000254325 HRCP23327 699 aa24.7■■□□□ 1.54
RFX1-201ENST00000254325 WIZO95785 1651 aa24.65■■□□□ 1.54
RFX1-201ENST00000254325 UBTFP17480 764 aaKnown RBP24.57■■□□□ 1.52
RFX1-201ENST00000254325 PPARGC1BQ86YN6 1023 aaKnown RBP24.56■■□□□ 1.52
RFX1-201ENST00000254325 TTBK1Q5TCY1 1321 aaPredicted RBP24.54■■□□□ 1.52
RFX1-201ENST00000254325 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
RFX1-201ENST00000254325 RANGAP1P46060 587 aaPredicted RBP24.36■■□□□ 1.49
RFX1-201ENST00000254325 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
RFX1-201ENST00000254325 TOP2AP11388 1531 aaKnown RBP24.33■■□□□ 1.49
RFX1-201ENST00000254325 APLP2Q06481 763 aa24.26■■□□□ 1.47
RFX1-201ENST00000254325 ZEB1P37275 1124 aaPredicted RBP24.25■■□□□ 1.47
RFX1-201ENST00000254325 CSRNP3Q8WYN3 585 aa24.24■■□□□ 1.47
RFX1-201ENST00000254325 BAZ1BQ9UIG0 1483 aaKnown RBP24.18■■□□□ 1.46
RFX1-201ENST00000254325 ABCC8Q09428 1581 aa24.17■■□□□ 1.46
RFX1-201ENST00000254325 CCER1Q8TC90 406 aaPredicted RBP24.11■■□□□ 1.45
RFX1-201ENST00000254325 UNC13AQ9UPW8 1703 aa24.1■■□□□ 1.45
RFX1-201ENST00000254325 SMARCA2P51531 1590 aa24.08■■□□□ 1.45
RFX1-201ENST00000254325 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
RFX1-201ENST00000254325 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
RFX1-201ENST00000254325 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
RFX1-201ENST00000254325 SOGA1O94964 1423 aa23.99■■□□□ 1.43
RFX1-201ENST00000254325 EEA1Q15075 1411 aa23.95■■□□□ 1.42
RFX1-201ENST00000254325 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.42
RFX1-201ENST00000254325 CEP162Q5TB80 1403 aa23.87■■□□□ 1.41
RFX1-201ENST00000254325 TNIKQ9UKE5 1360 aa23.81■■□□□ 1.4
RFX1-201ENST00000254325 GOLGA3Q08378 1498 aa23.8■■□□□ 1.4
RFX1-201ENST00000254325 HNRNPUL2Q1KMD3 747 aaKnown RBP23.74■■□□□ 1.39
RFX1-201ENST00000254325 RUSC2Q8N2Y8 1516 aa23.74■■□□□ 1.39
RFX1-201ENST00000254325 CEP164Q9UPV0 1460 aa23.68■■□□□ 1.38
RFX1-201ENST00000254325 ATP1B4Q9UN42 357 aaPredicted RBP23.67■■□□□ 1.38
RFX1-201ENST00000254325 CLIP1P30622 1438 aa23.64■■□□□ 1.38
RFX1-201ENST00000254325 EIF4G1Q04637 1599 aaKnown RBP23.64■■□□□ 1.38
RFX1-201ENST00000254325 PEG3Q9GZU2 1588 aa23.63■■□□□ 1.37
RFX1-201ENST00000254325 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
RFX1-201ENST00000254325 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
RFX1-201ENST00000254325 KIF27Q86VH2 1401 aa23.48■■□□□ 1.35
RFX1-201ENST00000254325 ITGAEP38570 1179 aa23.44■■□□□ 1.34
RFX1-201ENST00000254325 RAPGEF2Q9Y4G8 1499 aa23.4■■□□□ 1.34
RFX1-201ENST00000254325 HMGXB3Q12766 1538 aa23.38■■□□□ 1.33
RFX1-201ENST00000254325 CADPSQ9ULU8 1353 aa23.34■■□□□ 1.33
RFX1-201ENST00000254325 P3H3Q8IVL6 736 aa23.33■■□□□ 1.32
RFX1-201ENST00000254325 VPS8Q8N3P4 1428 aa23.3■■□□□ 1.32
RFX1-201ENST00000254325 CUX2O14529 1486 aa23.29■■□□□ 1.32
RFX1-201ENST00000254325 CFTRP13569 1480 aa23.25■■□□□ 1.31
RFX1-201ENST00000254325 TOP2BQ02880 1626 aa23.25■■□□□ 1.31
RFX1-201ENST00000254325 KIF21BO75037 1637 aa23.23■■□□□ 1.31
RFX1-201ENST00000254325 DIEXFQ68CQ4 756 aaKnown RBP23.2■■□□□ 1.3
RFX1-201ENST00000254325 CUX1P39880 1505 aa23.16■■□□□ 1.3
RFX1-201ENST00000254325 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
RFX1-201ENST00000254325 FAM50AQ14320 339 aaKnown RBP23.15■■□□□ 1.3
RFX1-201ENST00000254325 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
RFX1-201ENST00000254325 FANCD2Q9BXW9 1451 aa23.08■■□□□ 1.29
RFX1-201ENST00000254325 CENPBP07199 599 aaPredicted RBP23.07■■□□□ 1.28
RFX1-201ENST00000254325 ZNF316A6NFI3 1004 aaPredicted RBP23.04■■□□□ 1.28
RFX1-201ENST00000254325 KANK4Q5T7N3 995 aaPredicted RBP23.04■■□□□ 1.28
RFX1-201ENST00000254325 FGD5Q6ZNL6 1462 aa23.04■■□□□ 1.28
RFX1-201ENST00000254325 PRXQ9BXM0 1461 aa23.02■■□□□ 1.28
RFX1-201ENST00000254325 BIVM-ERCC5R4GMW8 1640 aa23■■□□□ 1.27
RFX1-201ENST00000254325 IGF1RP08069 1367 aa23■■□□□ 1.27
RFX1-201ENST00000254325 ERICH3Q5RHP9 1530 aa22.99■■□□□ 1.27
RFX1-201ENST00000254325 YTHDC1Q96MU7 727 aaKnown RBP22.98■■□□□ 1.27
RFX1-201ENST00000254325 NESP48681 1621 aa22.91■■□□□ 1.26
RFX1-201ENST00000254325 PDS5BQ9NTI5 1447 aa22.9■■□□□ 1.26
RFX1-201ENST00000254325 RAD54L2Q9Y4B4 1467 aa22.89■■□□□ 1.25
RFX1-201ENST00000254325 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.25
RFX1-201ENST00000254325 ARAP1Q96P48 1450 aa22.85■■□□□ 1.25
RFX1-201ENST00000254325 FHAD1B1AJZ9 1412 aa22.83■■□□□ 1.25
RFX1-201ENST00000254325 CCNB3Q8WWL7 1395 aa22.83■■□□□ 1.24
RFX1-201ENST00000254325 ARID3CA6NKF2 412 aa22.82■■□□□ 1.24
RFX1-201ENST00000254325 NEUROD1Q13562 356 aa22.8■■□□□ 1.24
RFX1-201ENST00000254325 FBLN2P98095 1184 aa22.78■■□□□ 1.24
RFX1-201ENST00000254325 ARHGAP35Q9NRY4 1499 aa22.78■■□□□ 1.24
RFX1-201ENST00000254325 MTUS2Q5JR59 1369 aa22.76■■□□□ 1.23
RFX1-201ENST00000254325 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
RFX1-201ENST00000254325 FHOD3Q2V2M9 1422 aa22.73■■□□□ 1.23
RFX1-201ENST00000254325 DNAJC5BQ9UF47 199 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms