Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.262e-20■□□□□ 9
RPS3P23396 COL22A1-203ENST00000435777 4355 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.462e-20■□□□□ 9
RPS3P23396 EEF2-203ENST00000596417 218 ntTSL 210□□□□□ -0.812e-20■□□□□ 9
RPS3P23396 SRSF7-210ENST00000452806 747 ntTSL 20.21□□□□□ -2.385e-7■□□□□ 9
RPS3P23396 ANP32A-211ENST00000561430 508 ntTSL 216.32■□□□□ 0.21e-7■□□□□ 9
RPS3P23396 ANP32A-201ENST00000267918 1084 ntTSL 314.6□□□□□ -0.071e-7■□□□□ 9
RPS3P23396 ANP32A-204ENST00000480858 352 ntTSL 1 (best)14.44□□□□□ -0.11e-7■□□□□ 9
RPS3P23396 ANP32A-206ENST00000483551 3711 ntTSL 58.61□□□□□ -1.031e-7■□□□□ 9
RPS3P23396 RPS8-207ENST00000485390 1115 ntTSL 1 (best)19.86■□□□□ 0.771e-38■□□□□ 9
RPS3P23396 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.671e-7■□□□□ 9
RPS3P23396 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.68■□□□□ 0.581e-7■□□□□ 9
RPS3P23396 NARF-220ENST00000582907 1454 ntTSL 513.77□□□□□ -0.211e-7■□□□□ 9
RPS3P23396 NAMPT-205ENST00000424768 1147 ntTSL 411.24□□□□□ -0.611e-7■□□□□ 9
RPS3P23396 NARF-226ENST00000584513 500 ntTSL 38.84□□□□□ -0.991e-7■□□□□ 9
RPS3P23396 MCM4-214ENST00000523853 354 ntTSL 28.52□□□□□ -1.051e-7■□□□□ 9
RPS3P23396 NAMPT-204ENST00000417537 300 ntTSL 47.87□□□□□ -1.151e-7■□□□□ 9
RPS3P23396 NAMPT-212ENST00000489732 1976 ntTSL 26.95□□□□□ -1.31e-7■□□□□ 9
RPS3P23396 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.531e-7■□□□□ 9
RPS3P23396 MCM4-204ENST00000518382 366 ntTSL 30.13□□□□□ -2.391e-7■□□□□ 9
RPS3P23396 DCAF7-204ENST00000582274 541 ntTSL 213.72□□□□□ -0.219e-7■□□□□ 9
RPS3P23396 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.06□□□□□ -1.69e-7■□□□□ 9
RPS3P23396 APP-207ENST00000415997 541 ntTSL 32.43□□□□□ -2.022e-8■□□□□ 9
RPS3P23396 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.021e-7■□□□□ 9
RPS3P23396 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC7.99□□□□□ -1.131e-7■□□□□ 9
RPS3P23396 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.221e-7■□□□□ 9
RPS3P23396 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.831e-7■□□□□ 9
RPS3P23396 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.28■□□□□ 0.681e-7■□□□□ 9
RPS3P23396 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.26■□□□□ 0.511e-7■□□□□ 9
RPS3P23396 TOP2A-205ENST00000581055 579 ntTSL 417.72■□□□□ 0.431e-7■□□□□ 9
RPS3P23396 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.54■□□□□ 0.41e-7■□□□□ 9
RPS3P23396 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.67■□□□□ 0.261e-7■□□□□ 9
RPS3P23396 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.231e-7■□□□□ 9
RPS3P23396 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.211e-7■□□□□ 9
RPS3P23396 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.21■□□□□ 0.191e-7■□□□□ 9
RPS3P23396 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.84■□□□□ 0.131e-7■□□□□ 9
RPS3P23396 BCL2L12-209ENST00000601168 416 ntTSL 215.73■□□□□ 0.111e-7■□□□□ 9
RPS3P23396 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.041e-7■□□□□ 9
RPS3P23396 BCL2L12-207ENST00000598979 893 ntTSL 314.23□□□□□ -0.131e-7■□□□□ 9
RPS3P23396 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.14□□□□□ -0.151e-7■□□□□ 9
RPS3P23396 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.06□□□□□ -0.161e-7■□□□□ 9
RPS3P23396 BCL2L12-213ENST00000619007 1630 ntTSL 1 (best) BASIC12.35□□□□□ -0.431e-7■□□□□ 9
RPS3P23396 TRA2B-212ENST00000480461 538 ntTSL 1 (best)12□□□□□ -0.491e-7■□□□□ 9
RPS3P23396 TRA2B-213ENST00000485530 839 ntTSL 212□□□□□ -0.491e-7■□□□□ 9
RPS3P23396 TRA2B-206ENST00000456380 1697 ntTSL 511.77□□□□□ -0.531e-7■□□□□ 9
RPS3P23396 TRA2B-208ENST00000465245 634 ntTSL 311.3□□□□□ -0.61e-7■□□□□ 9
RPS3P23396 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.961e-7■□□□□ 9
RPS3P23396 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC8.39□□□□□ -1.071e-7■□□□□ 9
RPS3P23396 EPB41-213ENST00000636666 3642 ntTSL 56.45□□□□□ -1.381e-7■□□□□ 9
RPS3P23396 BUB1-210ENST00000478175 759 ntTSL 54.05□□□□□ -1.761e-7■□□□□ 9
RPS3P23396 SF3B1-210ENST00000482158 772 ntTSL 22.14□□□□□ -2.071e-7■□□□□ 9
RPS3P23396 AKAP1-217ENST00000576295 614 ntTSL 313.9□□□□□ -0.183e-8■□□□□ 9
RPS3P23396 VDAC1-204ENST00000425992 703 ntTSL 323■■□□□ 1.271e-14■□□□□ 9
RPS3P23396 DNAJA3-210ENST00000574895 558 ntTSL 421.78■■□□□ 1.085e-10■□□□□ 9
RPS3P23396 DNAJA3-204ENST00000570857 554 ntTSL 321.38■■□□□ 1.015e-10■□□□□ 9
RPS3P23396 DNAJA3-211ENST00000575106 837 ntTSL 421.38■■□□□ 1.015e-10■□□□□ 9
RPS3P23396 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.971e-14■□□□□ 9
RPS3P23396 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.72e-37■□□□□ 9
RPS3P23396 DNAJA3-213ENST00000576911 1413 ntTSL 218.17■□□□□ 0.55e-10■□□□□ 9
RPS3P23396 DNAJA3-207ENST00000572974 495 ntTSL 418.15■□□□□ 0.55e-10■□□□□ 9
RPS3P23396 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.93■□□□□ 0.465e-10■□□□□ 9
RPS3P23396 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.462e-37■□□□□ 9
RPS3P23396 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.452e-37■□□□□ 9
RPS3P23396 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.382e-37■□□□□ 9
RPS3P23396 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.322e-37■□□□□ 9
RPS3P23396 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.322e-37■□□□□ 9
RPS3P23396 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.225e-10■□□□□ 9
RPS3P23396 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.25e-10■□□□□ 9
RPS3P23396 TTC38-205ENST00000451998 582 ntTSL 215.19■□□□□ 0.025e-10■□□□□ 9
RPS3P23396 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.11e-14■□□□□ 9
RPS3P23396 VDAC1-207ENST00000492324 635 ntTSL 213.06□□□□□ -0.321e-14■□□□□ 9
RPS3P23396 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.332e-37■□□□□ 9
RPS3P23396 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.332e-37■□□□□ 9
RPS3P23396 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.551e-14■□□□□ 9
RPS3P23396 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.192e-37■□□□□ 9
RPS3P23396 CDH2-204ENST00000418492 740 ntTSL 57.34□□□□□ -1.233e-6■□□□□ 9
RPS3P23396 DNAJA3-208ENST00000573120 403 ntTSL 1 (best)5.53□□□□□ -1.525e-10■□□□□ 9
RPS3P23396 TFRC-213ENST00000482479 540 ntTSL 33.67□□□□□ -1.825e-10■□□□□ 9
RPS3P23396 SNORD48-201ENST00000364953 64 ntBASIC1.74□□□□□ -2.132e-37■□□□□ 9
RPS3P23396 EPHA2-202ENST00000461614 875 ntTSL 224.16■■□□□ 1.463e-8■□□□□ 9
RPS3P23396 HNRNPU-229ENST00000640440 871 ntTSL 313.9□□□□□ -0.185e-37■□□□□ 9
RPS3P23396 CAPZA1-202ENST00000466066 765 ntTSL 29.2□□□□□ -0.941e-13■□□□□ 8.9
RPS3P23396 RPL13A-206ENST00000476268 1623 ntTSL 317.94■□□□□ 0.461e-37■□□□□ 8.9
RPS3P23396 SEC23A-214ENST00000557437 575 ntTSL 414.5□□□□□ -0.097e-35■□□□□ 8.9
RPS3P23396 EIF4G1-232ENST00000466311 573 ntTSL 214.23□□□□□ -0.131e-6■□□□□ 8.9
RPS3P23396 EIF4G1-225ENST00000448284 677 ntTSL 512.94□□□□□ -0.341e-14■□□□□ 8.9
RPS3P23396 TNRC18-204ENST00000413081 925 ntTSL 317.72■□□□□ 0.434e-7■□□□□ 8.9
RPS3P23396 SAFB-207ENST00000589863 2708 ntTSL 216.53■□□□□ 0.241e-7■□□□□ 8.9
RPS3P23396 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.041e-7■□□□□ 8.9
RPS3P23396 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.051e-7■□□□□ 8.9
RPS3P23396 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.091e-7■□□□□ 8.9
RPS3P23396 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.271e-7■□□□□ 8.9
RPS3P23396 ATXN2L-213ENST00000564162 770 ntTSL 516.57■□□□□ 0.244e-16■□□□□ 8.9
RPS3P23396 ATXN2L-219ENST00000566007 471 ntTSL 38.73□□□□□ -1.014e-16■□□□□ 8.9
RPS3P23396 RPL13A-205ENST00000474171 521 ntTSL 210.78□□□□□ -0.682e-13■□□□□ 8.9
RPS3P23396 RPL13A-203ENST00000468655 407 ntTSL 29.25□□□□□ -0.932e-13■□□□□ 8.9
RPS3P23396 CYB5R3-207ENST00000466276 581 ntTSL 412.75□□□□□ -0.371e-7■□□□□ 8.9
RPS3P23396 NEU4-211ENST00000435855 2281 ntTSL 221.04■□□□□ 0.961e-7■□□□□ 8.9
RPS3P23396 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.951e-7■□□□□ 8.9
RPS3P23396 NEU4-214ENST00000476542 536 ntTSL 220.97■□□□□ 0.951e-7■□□□□ 8.9
RPS3P23396 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.691e-7■□□□□ 8.9
Retrieved 100 of 24,271 protein–RNA pairs in 394.9 ms