RNA–Protein interactions for RNA: ENST00000480461.1

TRA2B-212, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 538 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-212ENST00000480461 NISCHQ9Y2I1 1504 aa29.21■■■□□ 2.27
TRA2B-212ENST00000480461 ABCC9O60706 1549 aa26.69■■□□□ 1.86
TRA2B-212ENST00000480461 CCDC180Q9P1Z9 1646 aa26.25■■□□□ 1.79
TRA2B-212ENST00000480461 DNAJC5BQ9UF47 199 aa25.45■■□□□ 1.66
TRA2B-212ENST00000480461 RB1CC1Q8TDY2 1594 aa25.19■■□□□ 1.62
TRA2B-212ENST00000480461 NACADO15069 1562 aa24.89■■□□□ 1.58
TRA2B-212ENST00000480461 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
TRA2B-212ENST00000480461 UNC13AQ9UPW8 1703 aa24.65■■□□□ 1.54
TRA2B-212ENST00000480461 BICRAQ9NZM4 1560 aa24.52■■□□□ 1.52
TRA2B-212ENST00000480461 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
TRA2B-212ENST00000480461 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
TRA2B-212ENST00000480461 ZCCHC6Q5VYS8 1495 aaKnown RBP24.36■■□□□ 1.49
TRA2B-212ENST00000480461 SHROOM4Q9ULL8 1493 aa24.13■■□□□ 1.45
TRA2B-212ENST00000480461 DCAF1Q9Y4B6 1507 aa24.12■■□□□ 1.45
TRA2B-212ENST00000480461 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
TRA2B-212ENST00000480461 CECR2Q9BXF3 1484 aa24.1■■□□□ 1.45
TRA2B-212ENST00000480461 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
TRA2B-212ENST00000480461 SCRIBQ14160 1630 aa23.87■■□□□ 1.41
TRA2B-212ENST00000480461 DNAJC5Q9H3Z4 198 aa23.72■■□□□ 1.39
TRA2B-212ENST00000480461 CUX2O14529 1486 aa23.24■■□□□ 1.31
TRA2B-212ENST00000480461 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
TRA2B-212ENST00000480461 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
TRA2B-212ENST00000480461 ATAD2BQ9ULI0 1458 aa22.85■■□□□ 1.25
TRA2B-212ENST00000480461 HMGXB3Q12766 1538 aa22.81■■□□□ 1.24
TRA2B-212ENST00000480461 NESP48681 1621 aa22.8■■□□□ 1.24
TRA2B-212ENST00000480461 SMARCA2P51531 1590 aa22.76■■□□□ 1.23
TRA2B-212ENST00000480461 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
TRA2B-212ENST00000480461 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
TRA2B-212ENST00000480461 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
TRA2B-212ENST00000480461 MROH2BQ7Z745 1585 aa22.57■■□□□ 1.2
TRA2B-212ENST00000480461 LAMC3Q9Y6N6 1575 aa22.56■■□□□ 1.2
TRA2B-212ENST00000480461 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
TRA2B-212ENST00000480461 PEG3Q9GZU2 1588 aa22.52■■□□□ 1.2
TRA2B-212ENST00000480461 KIF21AQ7Z4S6 1674 aa22.51■■□□□ 1.19
TRA2B-212ENST00000480461 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
TRA2B-212ENST00000480461 RSF1Q96T23 1441 aaPredicted RBP22.43■■□□□ 1.18
TRA2B-212ENST00000480461 PDS5BQ9NTI5 1447 aa22.41■■□□□ 1.18
TRA2B-212ENST00000480461 WIZO95785 1651 aa22.29■■□□□ 1.16
TRA2B-212ENST00000480461 MRC2Q9UBG0 1479 aa22.28■■□□□ 1.16
TRA2B-212ENST00000480461 WDR62O43379 1518 aa22.27■■□□□ 1.16
TRA2B-212ENST00000480461 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
TRA2B-212ENST00000480461 SUPT5HO00267 1087 aaKnown RBP22.12■■□□□ 1.13
TRA2B-212ENST00000480461 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
TRA2B-212ENST00000480461 TOP2AP11388 1531 aaKnown RBP22.01■■□□□ 1.11
TRA2B-212ENST00000480461 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
TRA2B-212ENST00000480461 OSCARQ8IYS5 282 aa21.99■■□□□ 1.11
TRA2B-212ENST00000480461 CFTRP13569 1480 aa21.91■■□□□ 1.1
TRA2B-212ENST00000480461 URB2Q14146 1524 aaKnown RBP21.89■■□□□ 1.09
TRA2B-212ENST00000480461 RIMBP3CA6NJZ7 1639 aa21.87■■□□□ 1.09
TRA2B-212ENST00000480461 RIMBP3BA6NNM3 1639 aa21.87■■□□□ 1.09
TRA2B-212ENST00000480461 RIMBP3Q9UFD9 1639 aa21.87■■□□□ 1.09
TRA2B-212ENST00000480461 CCDC88BA6NC98 1476 aa21.86■■□□□ 1.09
TRA2B-212ENST00000480461 ARHGEF11O15085 1522 aa21.74■■□□□ 1.07
TRA2B-212ENST00000480461 ZNF608Q9ULD9 1512 aaPredicted RBP21.69■■□□□ 1.06
TRA2B-212ENST00000480461 PRDM2Q13029 1718 aa21.68■■□□□ 1.06
TRA2B-212ENST00000480461 IFT140Q96RY7 1462 aa21.66■■□□□ 1.06
TRA2B-212ENST00000480461 EIF4G3O43432 1585 aaKnown RBP21.57■■□□□ 1.04
TRA2B-212ENST00000480461 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
TRA2B-212ENST00000480461 CYB5RLQ6IPT4 315 aa21.51■■□□□ 1.03
TRA2B-212ENST00000480461 ARAP1Q96P48 1450 aa21.51■■□□□ 1.03
TRA2B-212ENST00000480461 CHD1O14646 1710 aa21.49■■□□□ 1.03
TRA2B-212ENST00000480461 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
TRA2B-212ENST00000480461 ABCC8Q09428 1581 aa21.43■■□□□ 1.02
TRA2B-212ENST00000480461 TRHP20396 242 aaPredicted RBP21.42■■□□□ 1.02
TRA2B-212ENST00000480461 TARBP1Q13395 1621 aaKnown RBP21.42■■□□□ 1.02
TRA2B-212ENST00000480461 AQRO60306 1485 aaKnown RBP eCLIP21.39■■□□□ 1.023e-16■■■■□ 20.3
TRA2B-212ENST00000480461 POLA1P09884 1462 aaPredicted RBP21.31■■□□□ 1
TRA2B-212ENST00000480461 FBLN2P98095 1184 aa21.28■■□□□ 1
TRA2B-212ENST00000480461 CLASP1Q7Z460 1538 aa21.25■□□□□ 0.99
TRA2B-212ENST00000480461 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
TRA2B-212ENST00000480461 AEBP2Q6ZN18 517 aaPredicted RBP21.21■□□□□ 0.99
TRA2B-212ENST00000480461 SNAPC4Q5SXM2 1469 aa21.2■□□□□ 0.98
TRA2B-212ENST00000480461 TDRD9Q8NDG6 1382 aaKnown RBP21.17■□□□□ 0.98
TRA2B-212ENST00000480461 WDR97A6NE52 1622 aa21.17■□□□□ 0.98
TRA2B-212ENST00000480461 SYNJ1O43426 1573 aa21.16■□□□□ 0.98
TRA2B-212ENST00000480461 SOGA1O94964 1423 aa21.14■□□□□ 0.98
TRA2B-212ENST00000480461 CUX1P39880 1505 aa21.13■□□□□ 0.97
TRA2B-212ENST00000480461 MAGI1Q96QZ7 1491 aaPredicted RBP21.12■□□□□ 0.97
TRA2B-212ENST00000480461 FGD5Q6ZNL6 1462 aa21.09■□□□□ 0.97
TRA2B-212ENST00000480461 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
TRA2B-212ENST00000480461 CHMP7Q8WUX9 453 aaPredicted RBP21.06■□□□□ 0.96
TRA2B-212ENST00000480461 SYNJ2O15056 1496 aa21.05■□□□□ 0.96
TRA2B-212ENST00000480461 GRIN2BQ13224 1484 aa21.05■□□□□ 0.96
TRA2B-212ENST00000480461 GAPVD1Q14C86 1478 aa21.01■□□□□ 0.95
TRA2B-212ENST00000480461 PBRM1Q86U86 1689 aa20.97■□□□□ 0.95
TRA2B-212ENST00000480461 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
TRA2B-212ENST00000480461 BIVM-ERCC5R4GMW8 1640 aa20.92■□□□□ 0.94
TRA2B-212ENST00000480461 ERCC6L2Q5T890 1561 aa20.88■□□□□ 0.93
TRA2B-212ENST00000480461 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
TRA2B-212ENST00000480461 CHIC1Q5VXU3 224 aa20.84■□□□□ 0.93
TRA2B-212ENST00000480461 ABCA10Q8WWZ4 1543 aa20.82■□□□□ 0.92
TRA2B-212ENST00000480461 GRIN2AQ12879 1464 aa20.8■□□□□ 0.92
TRA2B-212ENST00000480461 CEP170Q5SW79 1584 aa20.79■□□□□ 0.92
TRA2B-212ENST00000480461 NUP160Q12769 1436 aa20.76■□□□□ 0.91
TRA2B-212ENST00000480461 ADAMTS12P58397 1594 aa20.76■□□□□ 0.91
TRA2B-212ENST00000480461 SHROOM2Q13796 1616 aa20.75■□□□□ 0.91
TRA2B-212ENST00000480461 KIF13AQ9H1H9 1805 aa20.73■□□□□ 0.91
TRA2B-212ENST00000480461 RUSC2Q8N2Y8 1516 aa20.63■□□□□ 0.89
TRA2B-212ENST00000480461 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
TRA2B-212ENST00000480461 IGF1RP08069 1367 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms