Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 AC138969.3-201ENST00000546612 1459 ntBASIC10.83□□□□□ -0.68
RPL39P62891 AC138932.2-201ENST00000548268 1459 ntBASIC10.83□□□□□ -0.68
RPL39P62891 AC126755.4-201ENST00000549796 1459 ntBASIC10.83□□□□□ -0.68
RPL39P62891 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 KLK8-202ENST00000320838 456 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 AL031284.1-201ENST00000419297 478 ntBASIC10.83□□□□□ -0.68
RPL39P62891 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC10.83□□□□□ -0.68
RPL39P62891 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC10.83□□□□□ -0.68
RPL39P62891 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC10.83□□□□□ -0.68
RPL39P62891 FXR1-221ENST00000491674 365 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 AC112191.1-201ENST00000523689 701 ntBASIC10.83□□□□□ -0.68
RPL39P62891 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC10.83□□□□□ -0.68
RPL39P62891 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 NAA38-207ENST00000576861 556 ntTSL 3 BASIC10.83□□□□□ -0.68
RPL39P62891 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 REXO1L4P-201ENST00000605109 1937 ntBASIC10.83□□□□□ -0.68
RPL39P62891 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 AL359881.3-201ENST00000602640 1721 ntBASIC10.83□□□□□ -0.68
RPL39P62891 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 APP-205ENST00000358918 2366 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
RPL39P62891 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC10.83□□□□□ -0.68
RPL39P62891 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
RPL39P62891 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 CICP8-201ENST00000455800 2813 ntBASIC10.82□□□□□ -0.68
RPL39P62891 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC10.82□□□□□ -0.68
RPL39P62891 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC10.82□□□□□ -0.68
RPL39P62891 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 HLA-H-201ENST00000383620 1096 ntBASIC10.82□□□□□ -0.68
RPL39P62891 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 AC074386.1-202ENST00000463561 864 ntBASIC10.82□□□□□ -0.68
RPL39P62891 AL135744.1-201ENST00000565098 629 ntBASIC10.82□□□□□ -0.68
RPL39P62891 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 NT5C-211ENST00000582170 653 ntTSL 3 BASIC10.82□□□□□ -0.68
RPL39P62891 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 SERF2-217ENST00000630046 862 ntTSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
RPL39P62891 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
RPL39P62891 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
RPL39P62891 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms