RNA–Protein interactions for RNA: ENST00000358918.7

APP-205, Transcript of amyloid beta precursor protein, humanhuman

TSL 5 BASIC

Gene APP, Length 2,366 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-205ENST00000358918 NISCHQ9Y2I1 1504 aa29.22■■■□□ 2.27
APP-205ENST00000358918 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
APP-205ENST00000358918 ZCCHC6Q5VYS8 1495 aaKnown RBP24.62■■□□□ 1.53
APP-205ENST00000358918 SHROOM4Q9ULL8 1493 aa24.46■■□□□ 1.51
APP-205ENST00000358918 DCAF8L2P0C7V8 631 aa24.32■■□□□ 1.48
APP-205ENST00000358918 HRCP23327 699 aa24.2■■□□□ 1.46
APP-205ENST00000358918 DCAF1Q9Y4B6 1507 aa24.01■■□□□ 1.43
APP-205ENST00000358918 SUPT5HO00267 1087 aaKnown RBP23.95■■□□□ 1.42
APP-205ENST00000358918 MYO15BQ96JP2 1530 aa23.7■■□□□ 1.38
APP-205ENST00000358918 PCGF6Q9BYE7 350 aa23.67■■□□□ 1.38
APP-205ENST00000358918 ABCC9O60706 1549 aa23.66■■□□□ 1.38
APP-205ENST00000358918 CHIC1Q5VXU3 224 aa23.6■■□□□ 1.37
APP-205ENST00000358918 PPARGC1BQ86YN6 1023 aaKnown RBP23.55■■□□□ 1.36
APP-205ENST00000358918 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
APP-205ENST00000358918 NACADO15069 1562 aa23.35■■□□□ 1.33
APP-205ENST00000358918 PELP1Q8IZL8 1130 aaKnown RBP23.3■■□□□ 1.32
APP-205ENST00000358918 RB1CC1Q8TDY2 1594 aa23.08■■□□□ 1.28
APP-205ENST00000358918 TRIM26Q12899 539 aaPredicted RBP23.04■■□□□ 1.28
APP-205ENST00000358918 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
APP-205ENST00000358918 ZEB1P37275 1124 aaPredicted RBP22.91■■□□□ 1.26
APP-205ENST00000358918 RSF1Q96T23 1441 aaPredicted RBP22.91■■□□□ 1.26
APP-205ENST00000358918 CECR2Q9BXF3 1484 aa22.8■■□□□ 1.24
APP-205ENST00000358918 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
APP-205ENST00000358918 UNC13AQ9UPW8 1703 aa22.67■■□□□ 1.22
APP-205ENST00000358918 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
APP-205ENST00000358918 WIZO95785 1651 aa22.52■■□□□ 1.2
APP-205ENST00000358918 PABPN1Q86U42 306 aaKnown RBP eCLIP22.5■■□□□ 1.19
APP-205ENST00000358918 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
APP-205ENST00000358918 BICRAQ9NZM4 1560 aa22.43■■□□□ 1.18
APP-205ENST00000358918 MYT1Q01538 1121 aa22.41■■□□□ 1.18
APP-205ENST00000358918 SMARCA4P51532 1647 aa22.36■■□□□ 1.17
APP-205ENST00000358918 ACIN1Q9UKV3 1341 aaKnown RBP22.31■■□□□ 1.16
APP-205ENST00000358918 TRIM41Q8WV44 630 aa22.24■■□□□ 1.15
APP-205ENST00000358918 TOP2AP11388 1531 aaKnown RBP22.19■■□□□ 1.14
APP-205ENST00000358918 NEUROD1Q13562 356 aa22.18■■□□□ 1.14
APP-205ENST00000358918 FAM9AQ8IZU1 332 aaPredicted RBP22.12■■□□□ 1.13
APP-205ENST00000358918 CENPBP07199 599 aaPredicted RBP22.11■■□□□ 1.13
APP-205ENST00000358918 CCDC88BA6NC98 1476 aa22.07■■□□□ 1.12
APP-205ENST00000358918 GTF3C3Q9Y5Q9 886 aa22.06■■□□□ 1.12
APP-205ENST00000358918 SMARCA2P51531 1590 aa22.04■■□□□ 1.12
APP-205ENST00000358918 CCER1Q8TC90 406 aaPredicted RBP22■■□□□ 1.11
APP-205ENST00000358918 EIF4G1Q04637 1599 aaKnown RBP21.99■■□□□ 1.11
APP-205ENST00000358918 PEG3Q9GZU2 1588 aa21.98■■□□□ 1.11
APP-205ENST00000358918 DIEXFQ68CQ4 756 aaKnown RBP21.97■■□□□ 1.11
APP-205ENST00000358918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.97■■□□□ 1.11
APP-205ENST00000358918 EHMT2Q96KQ7 1210 aa21.94■■□□□ 1.1
APP-205ENST00000358918 ATAD2BQ9ULI0 1458 aa21.92■■□□□ 1.1
APP-205ENST00000358918 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.09
APP-205ENST00000358918 ABCC8Q09428 1581 aa21.82■■□□□ 1.08
APP-205ENST00000358918 ZNF316A6NFI3 1004 aaPredicted RBP21.61■■□□□ 1.05
APP-205ENST00000358918 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
APP-205ENST00000358918 HMGXB3Q12766 1538 aa21.56■■□□□ 1.04
APP-205ENST00000358918 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
APP-205ENST00000358918 YTHDC1Q96MU7 727 aaKnown RBP21.53■■□□□ 1.04
APP-205ENST00000358918 SOGA1O94964 1423 aa21.51■■□□□ 1.03
APP-205ENST00000358918 SYNJ1O43426 1573 aa21.44■■□□□ 1.02
APP-205ENST00000358918 TTBK1Q5TCY1 1321 aaPredicted RBP21.44■■□□□ 1.02
APP-205ENST00000358918 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
APP-205ENST00000358918 CEP162Q5TB80 1403 aa21.38■■□□□ 1.01
APP-205ENST00000358918 MIER1Q8N108 512 aa21.38■■□□□ 1.01
APP-205ENST00000358918 CSRNP3Q8WYN3 585 aa21.36■■□□□ 1.01
APP-205ENST00000358918 EEA1Q15075 1411 aa21.36■■□□□ 1.01
APP-205ENST00000358918 CC2D2AQ9P2K1 1620 aa21.32■■□□□ 1
APP-205ENST00000358918 TNIKQ9UKE5 1360 aa21.28■■□□□ 1
APP-205ENST00000358918 CFTRP13569 1480 aa21.27■■□□□ 1
APP-205ENST00000358918 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
APP-205ENST00000358918 UBTFP17480 764 aaKnown RBP21.22■□□□□ 0.99
APP-205ENST00000358918 CLSPNQ9HAW4 1339 aa21.21■□□□□ 0.99
APP-205ENST00000358918 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
APP-205ENST00000358918 GOLGA3Q08378 1498 aa21.17■□□□□ 0.98
APP-205ENST00000358918 CUX1P39880 1505 aa21.14■□□□□ 0.98
APP-205ENST00000358918 CADPSQ9ULU8 1353 aa21.14■□□□□ 0.97
APP-205ENST00000358918 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
APP-205ENST00000358918 HNRNPUL2Q1KMD3 747 aaKnown RBP21.08■□□□□ 0.97
APP-205ENST00000358918 KIF21BO75037 1637 aa21.07■□□□□ 0.96
APP-205ENST00000358918 PRDM2Q13029 1718 aa21.07■□□□□ 0.96
APP-205ENST00000358918 SUPT16HQ9Y5B9 1047 aaKnown RBP21.06■□□□□ 0.96
APP-205ENST00000358918 RAPGEF2Q9Y4G8 1499 aa21.02■□□□□ 0.96
APP-205ENST00000358918 ANP32EQ9BTT0 268 aa20.97■□□□□ 0.95
APP-205ENST00000358918 KIF27Q86VH2 1401 aa20.94■□□□□ 0.94
APP-205ENST00000358918 TSHZ2Q9NRE2 1034 aa20.93■□□□□ 0.94
APP-205ENST00000358918 FANCD2Q9BXW9 1451 aa20.93■□□□□ 0.94
APP-205ENST00000358918 NESP48681 1621 aa20.92■□□□□ 0.94
APP-205ENST00000358918 RANGAP1P46060 587 aaPredicted RBP20.91■□□□□ 0.94
APP-205ENST00000358918 CLIP1P30622 1438 aa20.9■□□□□ 0.94
APP-205ENST00000358918 PRXQ9BXM0 1461 aa20.89■□□□□ 0.93
APP-205ENST00000358918 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
APP-205ENST00000358918 FGD5Q6ZNL6 1462 aa20.86■□□□□ 0.93
APP-205ENST00000358918 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
APP-205ENST00000358918 CUX2O14529 1486 aa20.84■□□□□ 0.93
APP-205ENST00000358918 APLP2Q06481 763 aa20.83■□□□□ 0.93
APP-205ENST00000358918 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.92
APP-205ENST00000358918 BCL11AQ9H165 835 aa20.8■□□□□ 0.92
APP-205ENST00000358918 LAMC3Q9Y6N6 1575 aa20.76■□□□□ 0.91
APP-205ENST00000358918 DNMBPQ6XZF7 1577 aa20.75■□□□□ 0.91
APP-205ENST00000358918 IGF1RP08069 1367 aa20.74■□□□□ 0.91
APP-205ENST00000358918 DHX57Q6P158 1386 aaKnown RBP20.74■□□□□ 0.91
APP-205ENST00000358918 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
APP-205ENST00000358918 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
APP-205ENST00000358918 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms