RNA–Protein interactions for RNA: ENST00000394055.7

CDH16-202, Transcript of cadherin 16, humanhuman

TSL 1 (best) BASIC

Gene CDH16, Length 2,821 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH16-202ENST00000394055 NISCHQ9Y2I1 1504 aa31.32■■■□□ 2.6
CDH16-202ENST00000394055 CCDC180Q9P1Z9 1646 aa26.77■■□□□ 1.88
CDH16-202ENST00000394055 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
CDH16-202ENST00000394055 ZCCHC6Q5VYS8 1495 aaKnown RBP26.42■■□□□ 1.82
CDH16-202ENST00000394055 DCAF8L2P0C7V8 631 aa26.15■■□□□ 1.78
CDH16-202ENST00000394055 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
CDH16-202ENST00000394055 DCAF1Q9Y4B6 1507 aa25.66■■□□□ 1.7
CDH16-202ENST00000394055 ABCC9O60706 1549 aa25.15■■□□□ 1.62
CDH16-202ENST00000394055 SCRIBQ14160 1630 aa25.1■■□□□ 1.61
CDH16-202ENST00000394055 MYO15BQ96JP2 1530 aa25.03■■□□□ 1.6
CDH16-202ENST00000394055 CHIC1Q5VXU3 224 aa24.93■■□□□ 1.58
CDH16-202ENST00000394055 NACADO15069 1562 aa24.83■■□□□ 1.57
CDH16-202ENST00000394055 RSF1Q96T23 1441 aaPredicted RBP24.67■■□□□ 1.54
CDH16-202ENST00000394055 RB1CC1Q8TDY2 1594 aa24.52■■□□□ 1.52
CDH16-202ENST00000394055 CECR2Q9BXF3 1484 aa24.48■■□□□ 1.51
CDH16-202ENST00000394055 MROH2BQ7Z745 1585 aa24.35■■□□□ 1.49
CDH16-202ENST00000394055 WIZO95785 1651 aa24.21■■□□□ 1.47
CDH16-202ENST00000394055 LOC105371045A0A1W2PR82 267 aa24.21■■□□□ 1.47
CDH16-202ENST00000394055 UNC13AQ9UPW8 1703 aa24.14■■□□□ 1.46
CDH16-202ENST00000394055 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.45
CDH16-202ENST00000394055 TRIM41Q8WV44 630 aa24.08■■□□□ 1.45
CDH16-202ENST00000394055 PABPN1Q86U42 306 aaKnown RBP eCLIP24■■□□□ 1.43
CDH16-202ENST00000394055 SMARCA4P51532 1647 aa23.93■■□□□ 1.42
CDH16-202ENST00000394055 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
CDH16-202ENST00000394055 BICRAQ9NZM4 1560 aa23.86■■□□□ 1.41
CDH16-202ENST00000394055 PCGF6Q9BYE7 350 aa23.85■■□□□ 1.41
CDH16-202ENST00000394055 TOP2AP11388 1531 aaKnown RBP23.81■■□□□ 1.4
CDH16-202ENST00000394055 EHMT2Q96KQ7 1210 aa23.76■■□□□ 1.39
CDH16-202ENST00000394055 CCDC88BA6NC98 1476 aa23.71■■□□□ 1.39
CDH16-202ENST00000394055 EIF4G1Q04637 1599 aaKnown RBP23.7■■□□□ 1.39
CDH16-202ENST00000394055 SMARCA2P51531 1590 aa23.67■■□□□ 1.38
CDH16-202ENST00000394055 HRCP23327 699 aa23.57■■□□□ 1.36
CDH16-202ENST00000394055 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
CDH16-202ENST00000394055 PEG3Q9GZU2 1588 aa23.45■■□□□ 1.34
CDH16-202ENST00000394055 TRIM26Q12899 539 aaPredicted RBP23.43■■□□□ 1.34
CDH16-202ENST00000394055 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
CDH16-202ENST00000394055 BAZ1BQ9UIG0 1483 aaKnown RBP23.33■■□□□ 1.33
CDH16-202ENST00000394055 SOGA1O94964 1423 aa23.27■■□□□ 1.32
CDH16-202ENST00000394055 PPARGC1BQ86YN6 1023 aaKnown RBP23.2■■□□□ 1.3
CDH16-202ENST00000394055 WRNQ14191 1432 aaPredicted RBP eCLIP23.2■■□□□ 1.3
CDH16-202ENST00000394055 RUSC2Q8N2Y8 1516 aa23.18■■□□□ 1.3
CDH16-202ENST00000394055 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
CDH16-202ENST00000394055 CSRNP3Q8WYN3 585 aa23.09■■□□□ 1.29
CDH16-202ENST00000394055 EEA1Q15075 1411 aa23.05■■□□□ 1.28
CDH16-202ENST00000394055 UBTFP17480 764 aaKnown RBP23.01■■□□□ 1.27
CDH16-202ENST00000394055 CEP162Q5TB80 1403 aa23■■□□□ 1.27
CDH16-202ENST00000394055 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
CDH16-202ENST00000394055 TNIKQ9UKE5 1360 aa22.96■■□□□ 1.27
CDH16-202ENST00000394055 HMGXB3Q12766 1538 aa22.95■■□□□ 1.27
CDH16-202ENST00000394055 PELP1Q8IZL8 1130 aaKnown RBP22.94■■□□□ 1.26
CDH16-202ENST00000394055 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
CDH16-202ENST00000394055 TTBK1Q5TCY1 1321 aaPredicted RBP22.9■■□□□ 1.26
CDH16-202ENST00000394055 TOP2BQ02880 1626 aa22.82■■□□□ 1.24
CDH16-202ENST00000394055 CEP164Q9UPV0 1460 aa22.81■■□□□ 1.24
CDH16-202ENST00000394055 KIF21BO75037 1637 aa22.76■■□□□ 1.23
CDH16-202ENST00000394055 BIVM-ERCC5R4GMW8 1640 aa22.73■■□□□ 1.23
CDH16-202ENST00000394055 ZEB1P37275 1124 aaPredicted RBP22.73■■□□□ 1.23
CDH16-202ENST00000394055 RAPGEF2Q9Y4G8 1499 aa22.72■■□□□ 1.23
CDH16-202ENST00000394055 CFTRP13569 1480 aa22.71■■□□□ 1.23
CDH16-202ENST00000394055 CUX1P39880 1505 aa22.69■■□□□ 1.22
CDH16-202ENST00000394055 RANGAP1P46060 587 aaPredicted RBP22.69■■□□□ 1.22
CDH16-202ENST00000394055 CLIP1P30622 1438 aa22.65■■□□□ 1.22
CDH16-202ENST00000394055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.62■■□□□ 1.21
CDH16-202ENST00000394055 CC2D2AQ9P2K1 1620 aa22.61■■□□□ 1.21
CDH16-202ENST00000394055 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
CDH16-202ENST00000394055 CCER1Q8TC90 406 aaPredicted RBP22.53■■□□□ 1.2
CDH16-202ENST00000394055 KIF27Q86VH2 1401 aa22.5■■□□□ 1.19
CDH16-202ENST00000394055 PRXQ9BXM0 1461 aa22.5■■□□□ 1.19
CDH16-202ENST00000394055 PRDM2Q13029 1718 aa22.49■■□□□ 1.19
CDH16-202ENST00000394055 VPS8Q8N3P4 1428 aa22.49■■□□□ 1.19
CDH16-202ENST00000394055 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
CDH16-202ENST00000394055 APLP2Q06481 763 aa22.4■■□□□ 1.18
CDH16-202ENST00000394055 CUX2O14529 1486 aa22.38■■□□□ 1.17
CDH16-202ENST00000394055 FGD5Q6ZNL6 1462 aa22.35■■□□□ 1.17
CDH16-202ENST00000394055 FANCD2Q9BXW9 1451 aa22.34■■□□□ 1.17
CDH16-202ENST00000394055 ARAP1Q96P48 1450 aa22.32■■□□□ 1.16
CDH16-202ENST00000394055 NESP48681 1621 aa22.31■■□□□ 1.16
CDH16-202ENST00000394055 HNRNPUL2Q1KMD3 747 aaKnown RBP22.31■■□□□ 1.16
CDH16-202ENST00000394055 MYT1Q01538 1121 aa22.3■■□□□ 1.16
CDH16-202ENST00000394055 IGF1RP08069 1367 aa22.28■■□□□ 1.16
CDH16-202ENST00000394055 CARMIL1Q5VZK9 1371 aa22.19■■□□□ 1.14
CDH16-202ENST00000394055 DNAJC5BQ9UF47 199 aa22.18■■□□□ 1.14
CDH16-202ENST00000394055 ARHGAP35Q9NRY4 1499 aa22.18■■□□□ 1.14
CDH16-202ENST00000394055 RAD54L2Q9Y4B4 1467 aa22.18■■□□□ 1.14
CDH16-202ENST00000394055 KANK4Q5T7N3 995 aaPredicted RBP22.17■■□□□ 1.14
CDH16-202ENST00000394055 DNMBPQ6XZF7 1577 aa22.16■■□□□ 1.14
CDH16-202ENST00000394055 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
CDH16-202ENST00000394055 POLA1P09884 1462 aaPredicted RBP22.12■■□□□ 1.13
CDH16-202ENST00000394055 LAMC3Q9Y6N6 1575 aa22.06■■□□□ 1.12
CDH16-202ENST00000394055 ABCA10Q8WWZ4 1543 aa22.05■■□□□ 1.12
CDH16-202ENST00000394055 URB2Q14146 1524 aaKnown RBP22.03■■□□□ 1.12
CDH16-202ENST00000394055 P3H3Q8IVL6 736 aa22.01■■□□□ 1.11
CDH16-202ENST00000394055 PDS5BQ9NTI5 1447 aa21.94■■□□□ 1.1
CDH16-202ENST00000394055 TDRD9Q8NDG6 1382 aaKnown RBP21.94■■□□□ 1.1
CDH16-202ENST00000394055 ATP1B4Q9UN42 357 aaPredicted RBP21.9■■□□□ 1.1
CDH16-202ENST00000394055 KIF21AQ7Z4S6 1674 aa21.89■■□□□ 1.1
CDH16-202ENST00000394055 RRBP1Q9P2E9 1410 aaKnown RBP21.89■■□□□ 1.09
CDH16-202ENST00000394055 ITGAEP38570 1179 aa21.88■■□□□ 1.09
CDH16-202ENST00000394055 FHOD3Q2V2M9 1422 aa21.87■■□□□ 1.09
CDH16-202ENST00000394055 TIAM1Q13009 1591 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms