RNA–Protein interactions for RNA: ENST00000372243.7

TMEM53-204, Transcript of transmembrane protein 53, humanhuman

TSL 2 BASIC

Gene TMEM53, Length 1,579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-204ENST00000372243 NISCHQ9Y2I1 1504 aa37.29■■■■□ 3.56
TMEM53-204ENST00000372243 CCDC180Q9P1Z9 1646 aa32.89■■■□□ 2.86
TMEM53-204ENST00000372243 ABCC9O60706 1549 aa31.44■■■□□ 2.62
TMEM53-204ENST00000372243 ZCCHC6Q5VYS8 1495 aaKnown RBP31.21■■■□□ 2.59
TMEM53-204ENST00000372243 DCAF1Q9Y4B6 1507 aa30.93■■■□□ 2.54
TMEM53-204ENST00000372243 MYO15BQ96JP2 1530 aa30.83■■■□□ 2.53
TMEM53-204ENST00000372243 DCAF8L2P0C7V8 631 aa30.79■■■□□ 2.52
TMEM53-204ENST00000372243 NACADO15069 1562 aa30.75■■■□□ 2.51
TMEM53-204ENST00000372243 RB1CC1Q8TDY2 1594 aa30.6■■■□□ 2.49
TMEM53-204ENST00000372243 SCRIBQ14160 1630 aa29.99■■■□□ 2.39
TMEM53-204ENST00000372243 UNC13AQ9UPW8 1703 aa29.92■■■□□ 2.38
TMEM53-204ENST00000372243 SHROOM4Q9ULL8 1493 aa29.77■■■□□ 2.36
TMEM53-204ENST00000372243 BICRAQ9NZM4 1560 aa29.65■■■□□ 2.34
TMEM53-204ENST00000372243 PABPN1Q86U42 306 aaKnown RBP eCLIP29.47■■■□□ 2.31
TMEM53-204ENST00000372243 CECR2Q9BXF3 1484 aa28.94■■■□□ 2.22
TMEM53-204ENST00000372243 BAZ1AQ9NRL2 1556 aaPredicted RBP28.87■■■□□ 2.21
TMEM53-204ENST00000372243 EIF4G1Q04637 1599 aaKnown RBP28.81■■■□□ 2.2
TMEM53-204ENST00000372243 SMARCA4P51532 1647 aa28.79■■■□□ 2.2
TMEM53-204ENST00000372243 MROH2BQ7Z745 1585 aa28.73■■■□□ 2.19
TMEM53-204ENST00000372243 RSF1Q96T23 1441 aaPredicted RBP28.65■■■□□ 2.18
TMEM53-204ENST00000372243 PEG3Q9GZU2 1588 aa28.54■■■□□ 2.16
TMEM53-204ENST00000372243 CC2D2AQ9P2K1 1620 aa28.51■■■□□ 2.15
TMEM53-204ENST00000372243 SMARCA2P51531 1590 aa28.47■■■□□ 2.15
TMEM53-204ENST00000372243 ATAD2BQ9ULI0 1458 aa28.45■■■□□ 2.15
TMEM53-204ENST00000372243 WIZO95785 1651 aa28.45■■■□□ 2.14
TMEM53-204ENST00000372243 SUPT5HO00267 1087 aaKnown RBP28.37■■■□□ 2.13
TMEM53-204ENST00000372243 NCAPD3P42695 1498 aa28.36■■■□□ 2.13
TMEM53-204ENST00000372243 HMGXB3Q12766 1538 aa28.29■■■□□ 2.12
TMEM53-204ENST00000372243 BAZ1BQ9UIG0 1483 aaKnown RBP28.26■■■□□ 2.11
TMEM53-204ENST00000372243 DNAJC5BQ9UF47 199 aa28.24■■■□□ 2.11
TMEM53-204ENST00000372243 TOP2AP11388 1531 aaKnown RBP28.21■■■□□ 2.11
TMEM53-204ENST00000372243 CCDC88BA6NC98 1476 aa27.86■■■□□ 2.05
TMEM53-204ENST00000372243 CADPSQ9ULU8 1353 aa27.56■■■□□ 2
TMEM53-204ENST00000372243 CFTRP13569 1480 aa27.54■■■□□ 2
TMEM53-204ENST00000372243 LAMC3Q9Y6N6 1575 aa27.51■■□□□ 1.99
TMEM53-204ENST00000372243 NESP48681 1621 aa27.42■■□□□ 1.98
TMEM53-204ENST00000372243 PRDM2Q13029 1718 aa27.41■■□□□ 1.98
TMEM53-204ENST00000372243 PDS5BQ9NTI5 1447 aa27.28■■□□□ 1.96
TMEM53-204ENST00000372243 FANCD2Q9BXW9 1451 aa27.22■■□□□ 1.95
TMEM53-204ENST00000372243 KIF21AQ7Z4S6 1674 aa27.14■■□□□ 1.94
TMEM53-204ENST00000372243 CEP164Q9UPV0 1460 aa27.13■■□□□ 1.93
TMEM53-204ENST00000372243 ERCC6Q03468 1493 aa27.06■■□□□ 1.92
TMEM53-204ENST00000372243 ABCC8Q09428 1581 aa27.03■■□□□ 1.92
TMEM53-204ENST00000372243 WRNQ14191 1432 aaPredicted RBP eCLIP27■■□□□ 1.91
TMEM53-204ENST00000372243 MRC2Q9UBG0 1479 aa26.95■■□□□ 1.91
TMEM53-204ENST00000372243 CUX1P39880 1505 aa26.91■■□□□ 1.9
TMEM53-204ENST00000372243 CHIC1Q5VXU3 224 aa26.91■■□□□ 1.9
TMEM53-204ENST00000372243 DNMBPQ6XZF7 1577 aa26.91■■□□□ 1.9
TMEM53-204ENST00000372243 URB2Q14146 1524 aaKnown RBP26.9■■□□□ 1.9
TMEM53-204ENST00000372243 THOC2Q8NI27 1593 aaKnown RBP26.89■■□□□ 1.9
TMEM53-204ENST00000372243 SYNJ1O43426 1573 aa26.89■■□□□ 1.89
TMEM53-204ENST00000372243 TOP2BQ02880 1626 aa26.89■■□□□ 1.89
TMEM53-204ENST00000372243 BIVM-ERCC5R4GMW8 1640 aa26.89■■□□□ 1.89
TMEM53-204ENST00000372243 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
TMEM53-204ENST00000372243 WDR62O43379 1518 aa26.86■■□□□ 1.89
TMEM53-204ENST00000372243 TRIM41Q8WV44 630 aa26.8■■□□□ 1.88
TMEM53-204ENST00000372243 FGD5Q6ZNL6 1462 aa26.72■■□□□ 1.87
TMEM53-204ENST00000372243 POLA1P09884 1462 aaPredicted RBP26.69■■□□□ 1.86
TMEM53-204ENST00000372243 CUX2O14529 1486 aa26.6■■□□□ 1.85
TMEM53-204ENST00000372243 SOGA1O94964 1423 aa26.58■■□□□ 1.85
TMEM53-204ENST00000372243 IFT140Q96RY7 1462 aa26.55■■□□□ 1.84
TMEM53-204ENST00000372243 TARBP1Q13395 1621 aaKnown RBP26.54■■□□□ 1.84
TMEM53-204ENST00000372243 RAD54L2Q9Y4B4 1467 aa26.53■■□□□ 1.84
TMEM53-204ENST00000372243 ABCA10Q8WWZ4 1543 aa26.51■■□□□ 1.83
TMEM53-204ENST00000372243 WDR97A6NE52 1622 aa26.49■■□□□ 1.83
TMEM53-204ENST00000372243 KIF27Q86VH2 1401 aa26.39■■□□□ 1.81
TMEM53-204ENST00000372243 EEA1Q15075 1411 aa26.36■■□□□ 1.81
TMEM53-204ENST00000372243 ABCA5Q8WWZ7 1642 aa26.35■■□□□ 1.81
TMEM53-204ENST00000372243 ZNF608Q9ULD9 1512 aaPredicted RBP26.33■■□□□ 1.81
TMEM53-204ENST00000372243 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.8
TMEM53-204ENST00000372243 RUSC2Q8N2Y8 1516 aa26.32■■□□□ 1.8
TMEM53-204ENST00000372243 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
TMEM53-204ENST00000372243 EIF4G3O43432 1585 aaKnown RBP26.29■■□□□ 1.8
TMEM53-204ENST00000372243 AQRO60306 1485 aaKnown RBP eCLIP26.27■■□□□ 1.8
TMEM53-204ENST00000372243 ERICH3Q5RHP9 1530 aa26.22■■□□□ 1.79
TMEM53-204ENST00000372243 GRIN2BQ13224 1484 aa26.21■■□□□ 1.79
TMEM53-204ENST00000372243 PBRM1Q86U86 1689 aa26.2■■□□□ 1.78
TMEM53-204ENST00000372243 IGF1RP08069 1367 aa26.19■■□□□ 1.78
TMEM53-204ENST00000372243 CSRNP3Q8WYN3 585 aa26.19■■□□□ 1.78
TMEM53-204ENST00000372243 FAM9AQ8IZU1 332 aaPredicted RBP26.17■■□□□ 1.78
TMEM53-204ENST00000372243 CUL7Q14999 1698 aa26.11■■□□□ 1.77
TMEM53-204ENST00000372243 MAGI1Q96QZ7 1491 aaPredicted RBP26.08■■□□□ 1.77
TMEM53-204ENST00000372243 PRXQ9BXM0 1461 aa26.06■■□□□ 1.76
TMEM53-204ENST00000372243 SNAPC4Q5SXM2 1469 aa26.05■■□□□ 1.76
TMEM53-204ENST00000372243 CARMIL1Q5VZK9 1371 aa26.04■■□□□ 1.76
TMEM53-204ENST00000372243 ADAMTS12P58397 1594 aa26.04■■□□□ 1.76
TMEM53-204ENST00000372243 FHAD1B1AJZ9 1412 aa26.02■■□□□ 1.76
TMEM53-204ENST00000372243 KIF21BO75037 1637 aa26.02■■□□□ 1.76
TMEM53-204ENST00000372243 RAPGEF2Q9Y4G8 1499 aa25.98■■□□□ 1.75
TMEM53-204ENST00000372243 SYNJ2O15056 1496 aa25.96■■□□□ 1.75
TMEM53-204ENST00000372243 GOLGA3Q08378 1498 aa25.91■■□□□ 1.74
TMEM53-204ENST00000372243 GRIN2AQ12879 1464 aa25.87■■□□□ 1.73
TMEM53-204ENST00000372243 CHMP7Q8WUX9 453 aaPredicted RBP25.86■■□□□ 1.73
TMEM53-204ENST00000372243 CHD1O14646 1710 aa25.82■■□□□ 1.72
TMEM53-204ENST00000372243 FBLN2P98095 1184 aa25.79■■□□□ 1.72
TMEM53-204ENST00000372243 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
TMEM53-204ENST00000372243 UBTFP17480 764 aaKnown RBP25.73■■□□□ 1.71
TMEM53-204ENST00000372243 NUP160Q12769 1436 aa25.73■■□□□ 1.71
TMEM53-204ENST00000372243 EHMT2Q96KQ7 1210 aa25.73■■□□□ 1.71
TMEM53-204ENST00000372243 TNIKQ9UKE5 1360 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms