Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 KRT8P14-201ENST00000414254 1442 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 RN7SL692P-201ENST00000464677 288 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AP005018.1-201ENST00000525475 301 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AP001063.1-201ENST00000568332 529 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 AC106881.1-201ENST00000605849 3329 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 MSTO2P-201ENST00000314835 1709 ntBASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SMC4Q9NTJ3 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 AC027307.3-201ENST00000594262 1100 ntBASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SMC4Q9NTJ3 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms