RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 NISCHQ9Y2I1 1504 aa34.71■■■■□ 3.15
SCLT1-209ENST00000511426 CCDC180Q9P1Z9 1646 aa30.41■■■□□ 2.46
SCLT1-209ENST00000511426 ZCCHC6Q5VYS8 1495 aaKnown RBP29.17■■■□□ 2.26
SCLT1-209ENST00000511426 DCAF1Q9Y4B6 1507 aa28.87■■■□□ 2.21
SCLT1-209ENST00000511426 MYO15BQ96JP2 1530 aa28.61■■■□□ 2.17
SCLT1-209ENST00000511426 ABCC9O60706 1549 aa28.56■■■□□ 2.16
SCLT1-209ENST00000511426 DCAF8L2P0C7V8 631 aa28.4■■■□□ 2.14
SCLT1-209ENST00000511426 NACADO15069 1562 aa28.34■■■□□ 2.13
SCLT1-209ENST00000511426 RB1CC1Q8TDY2 1594 aa28.07■■■□□ 2.08
SCLT1-209ENST00000511426 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
SCLT1-209ENST00000511426 SCRIBQ14160 1630 aa27.72■■■□□ 2.03
SCLT1-209ENST00000511426 UNC13AQ9UPW8 1703 aa27.33■■□□□ 1.97
SCLT1-209ENST00000511426 BICRAQ9NZM4 1560 aa27.11■■□□□ 1.93
SCLT1-209ENST00000511426 SUPT5HO00267 1087 aaKnown RBP26.89■■□□□ 1.9
SCLT1-209ENST00000511426 BAZ1AQ9NRL2 1556 aaPredicted RBP26.86■■□□□ 1.89
SCLT1-209ENST00000511426 RSF1Q96T23 1441 aaPredicted RBP26.85■■□□□ 1.89
SCLT1-209ENST00000511426 CECR2Q9BXF3 1484 aa26.83■■□□□ 1.89
SCLT1-209ENST00000511426 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
SCLT1-209ENST00000511426 MROH2BQ7Z745 1585 aa26.72■■□□□ 1.87
SCLT1-209ENST00000511426 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
SCLT1-209ENST00000511426 PEG3Q9GZU2 1588 aa26.48■■□□□ 1.83
SCLT1-209ENST00000511426 WIZO95785 1651 aa26.46■■□□□ 1.83
SCLT1-209ENST00000511426 SMARCA2P51531 1590 aa26.34■■□□□ 1.81
SCLT1-209ENST00000511426 EIF4G1Q04637 1599 aaKnown RBP26.34■■□□□ 1.81
SCLT1-209ENST00000511426 TOP2AP11388 1531 aaKnown RBP26.33■■□□□ 1.81
SCLT1-209ENST00000511426 ATAD2BQ9ULI0 1458 aa26.26■■□□□ 1.79
SCLT1-209ENST00000511426 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
SCLT1-209ENST00000511426 BAZ1BQ9UIG0 1483 aaKnown RBP26.12■■□□□ 1.77
SCLT1-209ENST00000511426 HMGXB3Q12766 1538 aa26.11■■□□□ 1.77
SCLT1-209ENST00000511426 CCDC88BA6NC98 1476 aa25.96■■□□□ 1.75
SCLT1-209ENST00000511426 CC2D2AQ9P2K1 1620 aa25.92■■□□□ 1.74
SCLT1-209ENST00000511426 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
SCLT1-209ENST00000511426 CFTRP13569 1480 aa25.5■■□□□ 1.67
SCLT1-209ENST00000511426 TRIM41Q8WV44 630 aa25.43■■□□□ 1.66
SCLT1-209ENST00000511426 CADPSQ9ULU8 1353 aa25.4■■□□□ 1.66
SCLT1-209ENST00000511426 PRDM2Q13029 1718 aa25.36■■□□□ 1.65
SCLT1-209ENST00000511426 ABCC8Q09428 1581 aa25.31■■□□□ 1.64
SCLT1-209ENST00000511426 WRNQ14191 1432 aaPredicted RBP eCLIP25.3■■□□□ 1.64
SCLT1-209ENST00000511426 LAMC3Q9Y6N6 1575 aa25.26■■□□□ 1.63
SCLT1-209ENST00000511426 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
SCLT1-209ENST00000511426 DNAJC5BQ9UF47 199 aa25.13■■□□□ 1.61
SCLT1-209ENST00000511426 SYNJ1O43426 1573 aa25.12■■□□□ 1.61
SCLT1-209ENST00000511426 BIVM-ERCC5R4GMW8 1640 aa25.12■■□□□ 1.61
SCLT1-209ENST00000511426 FANCD2Q9BXW9 1451 aa25.08■■□□□ 1.61
SCLT1-209ENST00000511426 EEA1Q15075 1411 aa25.05■■□□□ 1.6
SCLT1-209ENST00000511426 PDS5BQ9NTI5 1447 aa25.05■■□□□ 1.6
SCLT1-209ENST00000511426 NESP48681 1621 aa25.02■■□□□ 1.6
SCLT1-209ENST00000511426 CUX1P39880 1505 aa25■■□□□ 1.59
SCLT1-209ENST00000511426 CEP164Q9UPV0 1460 aa24.97■■□□□ 1.59
SCLT1-209ENST00000511426 DNMBPQ6XZF7 1577 aa24.89■■□□□ 1.58
SCLT1-209ENST00000511426 SOGA1O94964 1423 aa24.83■■□□□ 1.57
SCLT1-209ENST00000511426 TOPBP1Q92547 1522 aa24.8■■□□□ 1.56
SCLT1-209ENST00000511426 KIF21AQ7Z4S6 1674 aa24.78■■□□□ 1.56
SCLT1-209ENST00000511426 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
SCLT1-209ENST00000511426 FGD5Q6ZNL6 1462 aa24.76■■□□□ 1.55
SCLT1-209ENST00000511426 CSRNP3Q8WYN3 585 aa24.73■■□□□ 1.55
SCLT1-209ENST00000511426 URB2Q14146 1524 aaKnown RBP24.73■■□□□ 1.55
SCLT1-209ENST00000511426 KIF27Q86VH2 1401 aa24.72■■□□□ 1.55
SCLT1-209ENST00000511426 MRC2Q9UBG0 1479 aa24.69■■□□□ 1.54
SCLT1-209ENST00000511426 RUSC2Q8N2Y8 1516 aa24.69■■□□□ 1.54
SCLT1-209ENST00000511426 POLA1P09884 1462 aaPredicted RBP24.67■■□□□ 1.54
SCLT1-209ENST00000511426 LOC105371045A0A1W2PR82 267 aa24.66■■□□□ 1.54
SCLT1-209ENST00000511426 KIF21BO75037 1637 aa24.64■■□□□ 1.53
SCLT1-209ENST00000511426 ABCA10Q8WWZ4 1543 aa24.62■■□□□ 1.53
SCLT1-209ENST00000511426 WDR62O43379 1518 aa24.59■■□□□ 1.53
SCLT1-209ENST00000511426 ERCC6Q03468 1493 aa24.58■■□□□ 1.53
SCLT1-209ENST00000511426 GOLGA3Q08378 1498 aa24.58■■□□□ 1.53
SCLT1-209ENST00000511426 CUX2O14529 1486 aa24.58■■□□□ 1.52
SCLT1-209ENST00000511426 ERICH3Q5RHP9 1530 aa24.53■■□□□ 1.52
SCLT1-209ENST00000511426 WDR97A6NE52 1622 aa24.52■■□□□ 1.52
SCLT1-209ENST00000511426 PRXQ9BXM0 1461 aa24.51■■□□□ 1.51
SCLT1-209ENST00000511426 TNIKQ9UKE5 1360 aa24.49■■□□□ 1.51
SCLT1-209ENST00000511426 RAD54L2Q9Y4B4 1467 aa24.48■■□□□ 1.51
SCLT1-209ENST00000511426 THOC2Q8NI27 1593 aaKnown RBP24.48■■□□□ 1.51
SCLT1-209ENST00000511426 TARBP1Q13395 1621 aaKnown RBP24.44■■□□□ 1.5
SCLT1-209ENST00000511426 IGF1RP08069 1367 aa24.42■■□□□ 1.5
SCLT1-209ENST00000511426 IFT140Q96RY7 1462 aa24.42■■□□□ 1.5
SCLT1-209ENST00000511426 ABCA5Q8WWZ7 1642 aa24.41■■□□□ 1.5
SCLT1-209ENST00000511426 RAPGEF2Q9Y4G8 1499 aa24.38■■□□□ 1.49
SCLT1-209ENST00000511426 CUL7Q14999 1698 aa24.35■■□□□ 1.49
SCLT1-209ENST00000511426 GAPVD1Q14C86 1478 aa24.34■■□□□ 1.49
SCLT1-209ENST00000511426 UBTFP17480 764 aaKnown RBP24.33■■□□□ 1.49
SCLT1-209ENST00000511426 CARMIL1Q5VZK9 1371 aa24.32■■□□□ 1.48
SCLT1-209ENST00000511426 CEP162Q5TB80 1403 aa24.28■■□□□ 1.48
SCLT1-209ENST00000511426 EHMT2Q96KQ7 1210 aa24.27■■□□□ 1.48
SCLT1-209ENST00000511426 TDRD9Q8NDG6 1382 aaKnown RBP24.26■■□□□ 1.47
SCLT1-209ENST00000511426 GRIN2BQ13224 1484 aa24.2■■□□□ 1.46
SCLT1-209ENST00000511426 PBRM1Q86U86 1689 aa24.17■■□□□ 1.46
SCLT1-209ENST00000511426 CLIP1P30622 1438 aa24.13■■□□□ 1.45
SCLT1-209ENST00000511426 FHAD1B1AJZ9 1412 aa24.12■■□□□ 1.45
SCLT1-209ENST00000511426 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
SCLT1-209ENST00000511426 AQRO60306 1485 aaKnown RBP eCLIP24.12■■□□□ 1.45
SCLT1-209ENST00000511426 ZNF608Q9ULD9 1512 aaPredicted RBP24.11■■□□□ 1.45
SCLT1-209ENST00000511426 ADAMTS12P58397 1594 aa24.09■■□□□ 1.45
SCLT1-209ENST00000511426 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
SCLT1-209ENST00000511426 CTTNBP2Q8WZ74 1663 aa23.99■■□□□ 1.43
SCLT1-209ENST00000511426 SNAPC4Q5SXM2 1469 aa23.97■■□□□ 1.43
SCLT1-209ENST00000511426 VPS8Q8N3P4 1428 aa23.95■■□□□ 1.43
SCLT1-209ENST00000511426 EFCAB5A4FU69 1503 aa23.93■■□□□ 1.42
SCLT1-209ENST00000511426 SYNJ2O15056 1496 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms