RNA–Protein interactions for RNA: ENST00000600383.1

HIF3A-218, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,101 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-218ENST00000600383 NISCHQ9Y2I1 1504 aa33.84■■■■□ 3.01
HIF3A-218ENST00000600383 CCDC180Q9P1Z9 1646 aa29.3■■■□□ 2.28
HIF3A-218ENST00000600383 ZCCHC6Q5VYS8 1495 aaKnown RBP28.4■■■□□ 2.14
HIF3A-218ENST00000600383 DCAF8L2P0C7V8 631 aa28.33■■■□□ 2.13
HIF3A-218ENST00000600383 SHROOM4Q9ULL8 1493 aa27.99■■■□□ 2.07
HIF3A-218ENST00000600383 ABCC9O60706 1549 aa27.91■■■□□ 2.06
HIF3A-218ENST00000600383 DCAF1Q9Y4B6 1507 aa27.83■■■□□ 2.05
HIF3A-218ENST00000600383 MYO15BQ96JP2 1530 aa27.43■■□□□ 1.98
HIF3A-218ENST00000600383 NACADO15069 1562 aa27.34■■□□□ 1.97
HIF3A-218ENST00000600383 SCRIBQ14160 1630 aa27.18■■□□□ 1.94
HIF3A-218ENST00000600383 RB1CC1Q8TDY2 1594 aa27.11■■□□□ 1.93
HIF3A-218ENST00000600383 SUPT5HO00267 1087 aaKnown RBP27.03■■□□□ 1.92
HIF3A-218ENST00000600383 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
HIF3A-218ENST00000600383 PABPN1Q86U42 306 aaKnown RBP eCLIP26.47■■□□□ 1.83
HIF3A-218ENST00000600383 CECR2Q9BXF3 1484 aa26.39■■□□□ 1.82
HIF3A-218ENST00000600383 RSF1Q96T23 1441 aaPredicted RBP26.36■■□□□ 1.81
HIF3A-218ENST00000600383 BICRAQ9NZM4 1560 aa26.3■■□□□ 1.8
HIF3A-218ENST00000600383 MROH2BQ7Z745 1585 aa26.2■■□□□ 1.79
HIF3A-218ENST00000600383 BAZ1AQ9NRL2 1556 aaPredicted RBP26.09■■□□□ 1.77
HIF3A-218ENST00000600383 WIZO95785 1651 aa26■■□□□ 1.75
HIF3A-218ENST00000600383 SMARCA4P51532 1647 aa25.96■■□□□ 1.75
HIF3A-218ENST00000600383 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
HIF3A-218ENST00000600383 TOP2AP11388 1531 aaKnown RBP25.64■■□□□ 1.69
HIF3A-218ENST00000600383 ATAD2BQ9ULI0 1458 aa25.56■■□□□ 1.68
HIF3A-218ENST00000600383 PEG3Q9GZU2 1588 aa25.55■■□□□ 1.68
HIF3A-218ENST00000600383 EIF4G1Q04637 1599 aaKnown RBP25.53■■□□□ 1.68
HIF3A-218ENST00000600383 SMARCA2P51531 1590 aa25.49■■□□□ 1.67
HIF3A-218ENST00000600383 CCDC88BA6NC98 1476 aa25.49■■□□□ 1.67
HIF3A-218ENST00000600383 BAZ1BQ9UIG0 1483 aaKnown RBP25.44■■□□□ 1.66
HIF3A-218ENST00000600383 TRIM41Q8WV44 630 aa25.33■■□□□ 1.64
HIF3A-218ENST00000600383 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
HIF3A-218ENST00000600383 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
HIF3A-218ENST00000600383 CC2D2AQ9P2K1 1620 aa25.15■■□□□ 1.62
HIF3A-218ENST00000600383 ABCC8Q09428 1581 aa25.03■■□□□ 1.6
HIF3A-218ENST00000600383 FAM9AQ8IZU1 332 aaPredicted RBP24.99■■□□□ 1.59
HIF3A-218ENST00000600383 LOC105371045A0A1W2PR82 267 aa24.95■■□□□ 1.59
HIF3A-218ENST00000600383 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.56
HIF3A-218ENST00000600383 CFTRP13569 1480 aa24.77■■□□□ 1.56
HIF3A-218ENST00000600383 EHMT2Q96KQ7 1210 aa24.75■■□□□ 1.55
HIF3A-218ENST00000600383 CADPSQ9ULU8 1353 aa24.71■■□□□ 1.55
HIF3A-218ENST00000600383 DNAJC5BQ9UF47 199 aa24.7■■□□□ 1.54
HIF3A-218ENST00000600383 SYNJ1O43426 1573 aa24.67■■□□□ 1.54
HIF3A-218ENST00000600383 SOGA1O94964 1423 aa24.62■■□□□ 1.53
HIF3A-218ENST00000600383 RUSC2Q8N2Y8 1516 aa24.53■■□□□ 1.52
HIF3A-218ENST00000600383 NESP48681 1621 aa24.52■■□□□ 1.52
HIF3A-218ENST00000600383 TOP2BQ02880 1626 aa24.51■■□□□ 1.51
HIF3A-218ENST00000600383 PRDM2Q13029 1718 aa24.51■■□□□ 1.51
HIF3A-218ENST00000600383 CUX1P39880 1505 aa24.47■■□□□ 1.51
HIF3A-218ENST00000600383 CSRNP3Q8WYN3 585 aa24.47■■□□□ 1.51
HIF3A-218ENST00000600383 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
HIF3A-218ENST00000600383 BIVM-ERCC5R4GMW8 1640 aa24.43■■□□□ 1.5
HIF3A-218ENST00000600383 EEA1Q15075 1411 aa24.42■■□□□ 1.5
HIF3A-218ENST00000600383 LAMC3Q9Y6N6 1575 aa24.37■■□□□ 1.49
HIF3A-218ENST00000600383 UBTFP17480 764 aaKnown RBP24.28■■□□□ 1.48
HIF3A-218ENST00000600383 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
HIF3A-218ENST00000600383 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
HIF3A-218ENST00000600383 FGD5Q6ZNL6 1462 aa24.21■■□□□ 1.47
HIF3A-218ENST00000600383 KIF27Q86VH2 1401 aa24.17■■□□□ 1.46
HIF3A-218ENST00000600383 TOPBP1Q92547 1522 aa24.16■■□□□ 1.46
HIF3A-218ENST00000600383 DNMBPQ6XZF7 1577 aa24.16■■□□□ 1.46
HIF3A-218ENST00000600383 GOLGA3Q08378 1498 aa24.16■■□□□ 1.46
HIF3A-218ENST00000600383 TNIKQ9UKE5 1360 aa24.12■■□□□ 1.45
HIF3A-218ENST00000600383 KIF21AQ7Z4S6 1674 aa24.12■■□□□ 1.45
HIF3A-218ENST00000600383 CUX2O14529 1486 aa24.12■■□□□ 1.45
HIF3A-218ENST00000600383 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
HIF3A-218ENST00000600383 KIF21BO75037 1637 aa24.08■■□□□ 1.45
HIF3A-218ENST00000600383 POLA1P09884 1462 aaPredicted RBP24.07■■□□□ 1.44
HIF3A-218ENST00000600383 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
HIF3A-218ENST00000600383 RAPGEF2Q9Y4G8 1499 aa24.07■■□□□ 1.44
HIF3A-218ENST00000600383 CEP162Q5TB80 1403 aa24.04■■□□□ 1.44
HIF3A-218ENST00000600383 RANGAP1P46060 587 aaPredicted RBP23.99■■□□□ 1.43
HIF3A-218ENST00000600383 PRXQ9BXM0 1461 aa23.99■■□□□ 1.43
HIF3A-218ENST00000600383 IGF1RP08069 1367 aa23.98■■□□□ 1.43
HIF3A-218ENST00000600383 PCGF6Q9BYE7 350 aa23.95■■□□□ 1.42
HIF3A-218ENST00000600383 ABCA10Q8WWZ4 1543 aa23.93■■□□□ 1.42
HIF3A-218ENST00000600383 MRC2Q9UBG0 1479 aa23.91■■□□□ 1.42
HIF3A-218ENST00000600383 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
HIF3A-218ENST00000600383 ERICH3Q5RHP9 1530 aa23.9■■□□□ 1.42
HIF3A-218ENST00000600383 CARMIL1Q5VZK9 1371 aa23.88■■□□□ 1.41
HIF3A-218ENST00000600383 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
HIF3A-218ENST00000600383 PPARGC1BQ86YN6 1023 aaKnown RBP23.87■■□□□ 1.41
HIF3A-218ENST00000600383 CLIP1P30622 1438 aa23.84■■□□□ 1.41
HIF3A-218ENST00000600383 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
HIF3A-218ENST00000600383 WDR97A6NE52 1622 aa23.76■■□□□ 1.39
HIF3A-218ENST00000600383 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
HIF3A-218ENST00000600383 TARBP1Q13395 1621 aaKnown RBP23.74■■□□□ 1.39
HIF3A-218ENST00000600383 WDR62O43379 1518 aa23.73■■□□□ 1.39
HIF3A-218ENST00000600383 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
HIF3A-218ENST00000600383 TTBK1Q5TCY1 1321 aaPredicted RBP23.68■■□□□ 1.38
HIF3A-218ENST00000600383 AQRO60306 1485 aaKnown RBP eCLIP23.68■■□□□ 1.38
HIF3A-218ENST00000600383 IFT140Q96RY7 1462 aa23.63■■□□□ 1.37
HIF3A-218ENST00000600383 CUL7Q14999 1698 aa23.63■■□□□ 1.37
HIF3A-218ENST00000600383 THOC2Q8NI27 1593 aaKnown RBP23.63■■□□□ 1.37
HIF3A-218ENST00000600383 ZNF608Q9ULD9 1512 aaPredicted RBP23.6■■□□□ 1.37
HIF3A-218ENST00000600383 VPS8Q8N3P4 1428 aa23.59■■□□□ 1.37
HIF3A-218ENST00000600383 APLP2Q06481 763 aa23.55■■□□□ 1.36
HIF3A-218ENST00000600383 ARAP1Q96P48 1450 aa23.53■■□□□ 1.36
HIF3A-218ENST00000600383 ARHGAP35Q9NRY4 1499 aa23.53■■□□□ 1.36
HIF3A-218ENST00000600383 PBRM1Q86U86 1689 aa23.51■■□□□ 1.35
HIF3A-218ENST00000600383 GRIN2BQ13224 1484 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms