Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AL161645.1-201ENST00000622716 1255 ntBASIC13.73□□□□□ -0.21
SCN1BQ07699 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.73□□□□□ -0.21
SCN1BQ07699 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.73□□□□□ -0.21
SCN1BQ07699 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.73□□□□□ -0.21
SCN1BQ07699 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.73□□□□□ -0.21
SCN1BQ07699 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
SCN1BQ07699 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 AC073439.1-201ENST00000624121 1774 ntBASIC13.73□□□□□ -0.21
SCN1BQ07699 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.73□□□□□ -0.21
SCN1BQ07699 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SCN1BQ07699 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SCN1BQ07699 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 PMS2P7-201ENST00000506558 1336 ntBASIC13.72□□□□□ -0.21
SCN1BQ07699 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.72□□□□□ -0.21
SCN1BQ07699 MED15P5-201ENST00000423150 992 ntBASIC13.72□□□□□ -0.21
SCN1BQ07699 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.72□□□□□ -0.21
SCN1BQ07699 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.72□□□□□ -0.21
SCN1BQ07699 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.72□□□□□ -0.21
SCN1BQ07699 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.72□□□□□ -0.21
SCN1BQ07699 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.72□□□□□ -0.21
SCN1BQ07699 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
SCN1BQ07699 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.72□□□□□ -0.21
SCN1BQ07699 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SCN1BQ07699 MST1P2-201ENST00000457982 2291 ntBASIC13.72□□□□□ -0.21
SCN1BQ07699 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SCN1BQ07699 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.72□□□□□ -0.21
SCN1BQ07699 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SCN1BQ07699 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.72□□□□□ -0.21
SCN1BQ07699 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
SCN1BQ07699 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
SCN1BQ07699 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.71□□□□□ -0.21
SCN1BQ07699 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 AC005562.1-201ENST00000583030 3219 ntBASIC13.71□□□□□ -0.21
SCN1BQ07699 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SCN1BQ07699 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.71□□□□□ -0.21
SCN1BQ07699 KRT18P3-201ENST00000451602 1288 ntBASIC13.71□□□□□ -0.21
SCN1BQ07699 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.71□□□□□ -0.21
SCN1BQ07699 PRYP6-201ENST00000514804 343 ntBASIC13.71□□□□□ -0.21
SCN1BQ07699 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SCN1BQ07699 SLC25A1P1-201ENST00000528351 927 ntBASIC13.71□□□□□ -0.21
SCN1BQ07699 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SCN1BQ07699 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC13.71□□□□□ -0.21
SCN1BQ07699 AL365330.1-201ENST00000607459 531 ntBASIC13.71□□□□□ -0.21
SCN1BQ07699 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms